Ping CV Data Science Training
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- University of California, Los Angeles
Pinned
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CardioKG
CardioKG PublicPing Lab Intern Project, Summar, 2022:
Link prediction through Graph Neural Network (GNN) model over the Knowledgegraph in the interface of Cardiovascular Disease (CVD) and Drugs.
Jupyter Notebook
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Cardio-NER-BioBERT
Cardio-NER-BioBERT PublicPing Lab Intern Project, Summar, 2022:
Building Named Entity Recognition model with fine tuning BioBERT - a data engineering approach
Jupyter Notebook 1
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Cardio-MeSH2Pgraph
Cardio-MeSH2Pgraph PublicPing Lab Intern Project, Summar, 2022:
Mapping MeSH (ICD codes) to molecular mechanism through protein-protein co-occurance graph -toward high precission medicine
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engineering-protein-graph-data
engineering-protein-graph-data PublicBy Irsyad:
The project documentation and codes in the study of ion-channel in OS-CVD categories implementing graph data API. Summer 2021.
Repositories
- topic_modeling_imputation Public
This repository contains the code associated with the project "Improving Disease Document Labeling in CaseOLAP LIFT via Topic Modeling" Joanne Qiu Alexander Pelletier Ping Lab UCLA Cardiovascular Data Science Summer Internship Program September 15, 2023
- Multi-Omics-Proteomics-Integration Public
This repository contains the code and input data for the multi-omics proteomics integration project.
- caseolap-pipeline Public
Samir (akre96): Implementation of the caseOLAP pipeline for mapping relationships between oxidative stress and drugs.
- Cardio-MeSH2Pgraph Public
Ping Lab Intern Project, Summar, 2022:
Mapping MeSH (ICD codes) to molecular mechanism through protein-protein co-occurance graph -toward high precission medicine
- Cardio-NER-BioBERT Public
Ping Lab Intern Project, Summar, 2022:
Building Named Entity Recognition model with fine tuning BioBERT - a data engineering approach
- pig-proteomics-database Public Forked from sartaajkhan/pig-proteomics-database
Building a bioinformatics tool for generating a more reliable protein sequence database for Sus scrofa cardiac proteomics studies
- engineering-protein-graph-data Public
By Irsyad:
The project documentation and codes in the study of ion-channel in OS-CVD categories implementing graph data API. Summer 2021.
- caseolap-protein-to-CVD-categories Public Forked from josephramirezgit/caseolap-protein-to-CVD-categories
Match UnitRef Protein IDs to CVD disease categories with their corresponding CaseOLAP scores
