Reduce precision again for CI

pinin4fjords · Nov 21, 2022 · 59bac88 · 59bac88
1 parent 2adf064
commit 59bac88
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Showing 2 changed files with 27 additions and 27 deletions.
diff --git a/modules/nf-core/deseq2/differential/templates/deseq_de.R b/modules/nf-core/deseq2/differential/templates/deseq_de.R
@@ -60,12 +60,12 @@ read_delim_flexible <- function(file, header = TRUE, row.names = NULL){
 #'
 #' @return output Data frame
 
-round_dataframe_columns <- function(df, columns = NULL, digits = 8){
+round_dataframe_columns <- function(df, columns = NULL, digits = 7){
     if (is.null(columns)){
         columns <- colnames(df)
     }
 
-    df[,columns] <- format(data.frame(df[, columns]), nsmall = 8)
+    df[,columns] <- format(data.frame(df[, columns]), nsmall = digits)
 
     # Convert columns back to numeric
 

diff --git a/tests/modules/nf-core/deseq2/differential/test.yml b/tests/modules/nf-core/deseq2/differential/test.yml
@@ -1,120 +1,120 @@
 - name: deseq2 differential test_deseq2_differential
   command: nextflow run ./tests/modules/nf-core/deseq2/differential -entry test_deseq2_differential -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/deseq2/differential/nextflow.config
   tags:
-    - deseq2
     - deseq2/differential
+    - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: 86f0312a4691dfb4d7c15643059d8fb8
+      md5sum: a00c45695c7ded0a3fe283badb0ff6aa
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
-      md5sum: 1077cf03a8c6a155932eaaed7415b74c
+      md5sum: 835dd0c35bb59504348c534d83220962
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: 4034522732d975951c79731acc1c9731
+      md5sum: d9f88e278ff0e075f4f9171c02d84c13
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6.rlog.tsv
-      md5sum: 1077cf03a8c6a155932eaaed7415b74c
+      md5sum: 835dd0c35bb59504348c534d83220962
 
 - name: deseq2 differential test_deseq2_differential_spikes
   command: nextflow run ./tests/modules/nf-core/deseq2/differential -entry test_deseq2_differential_spikes -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/deseq2/differential/nextflow.config
   tags:
-    - deseq2
     - deseq2/differential
+    - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: 150a32eef482244b47ddc7f7ffb1ad2a
+      md5sum: f8afccfcc81c187d46a648cc1fbac668
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 1708374146b4e8c28fbc78fa292102cd
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 1c9c7ee4ca90ff0d91ae16dbfd64fdc9
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
-      md5sum: c28300837df9ca6adeba2a52ea5e181e
+      md5sum: 68a4068331d67a9767aafe3f6fa40360
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: 88b3230c5a4ad8717c1d0b38c824f1fc
+      md5sum: b18a7320ae857283c82ea6ff859302d0
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 1708374146b4e8c28fbc78fa292102cd
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
       md5sum: 1c9c7ee4ca90ff0d91ae16dbfd64fdc9
     - path: output/deseq2/treatment-mCherry-hND6.rlog.tsv
-      md5sum: c28300837df9ca6adeba2a52ea5e181e
+      md5sum: 68a4068331d67a9767aafe3f6fa40360
     - path: output/spoof/spikes.txt
       md5sum: 8bd8a80b4616fc0a68f69bee6869c8bc
 
 - name: deseq2 differential test_deseq2_differential_strip_spikes
   command: nextflow run ./tests/modules/nf-core/deseq2/differential -entry test_deseq2_differential_strip_spikes -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/deseq2/differential/nextflow.config
   tags:
-    - deseq2
     - deseq2/differential
+    - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: 23de450bda331e7b9330dfd66042a309
+      md5sum: ac6fa7f3dcd4fa3cfa20c0ed2a618f30
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: a526a1bb5cb270f5a4a1641fefd289b3
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: bb916c41f91b2ddcc9607619a023ef44
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
-      md5sum: 1660bd7529a2f607cd8e71820ea26310
+      md5sum: 8b2be7f2ec5000cc4d3f795a41d40e77
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: 7a385151de48430e592dbcc72c0d0d75
+      md5sum: 8dcdcedd79b27eb490bf43f3d7b74151
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: a526a1bb5cb270f5a4a1641fefd289b3
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
       md5sum: bb916c41f91b2ddcc9607619a023ef44
     - path: output/deseq2/treatment-mCherry-hND6.rlog.tsv
-      md5sum: 1660bd7529a2f607cd8e71820ea26310
+      md5sum: 8b2be7f2ec5000cc4d3f795a41d40e77
     - path: output/spoof/spikes.txt
       md5sum: 8bd8a80b4616fc0a68f69bee6869c8bc
 
 - name: deseq2 differential test_deseq2_differential_csv
   command: nextflow run ./tests/modules/nf-core/deseq2/differential -entry test_deseq2_differential_csv -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/deseq2/differential/nextflow.config
   tags:
-    - deseq2
     - deseq2/differential
+    - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: 86f0312a4691dfb4d7c15643059d8fb8
+      md5sum: a00c45695c7ded0a3fe283badb0ff6aa
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
-      md5sum: 1077cf03a8c6a155932eaaed7415b74c
+      md5sum: 835dd0c35bb59504348c534d83220962
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: 4034522732d975951c79731acc1c9731
+      md5sum: d9f88e278ff0e075f4f9171c02d84c13
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6.rlog.tsv
-      md5sum: 1077cf03a8c6a155932eaaed7415b74c
+      md5sum: 835dd0c35bb59504348c534d83220962
     - path: output/tsv/test.csv
       md5sum: f8e51c79c9add0d07eb46aba6a09d33c
 
 - name: deseq2 differential test_deseq2_differential_vst_nsub
   command: nextflow run ./tests/modules/nf-core/deseq2/differential -entry test_deseq2_differential_vst_nsub -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/deseq2/differential/nextflow.config
   tags:
-    - deseq2
     - deseq2/differential
+    - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: 86f0312a4691dfb4d7c15643059d8fb8
+      md5sum: a00c45695c7ded0a3fe283badb0ff6aa
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.vst.tsv
-      md5sum: 0960df48c0116a626289960284148fbb
+      md5sum: a1e398efc1aa7c468a56fc34e0482bf3
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: 4034522732d975951c79731acc1c9731
+      md5sum: d9f88e278ff0e075f4f9171c02d84c13
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6.vst.tsv
-      md5sum: 0960df48c0116a626289960284148fbb
+      md5sum: a1e398efc1aa7c468a56fc34e0482bf3