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quantification-meta.pb.go
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quantification-meta.pb.go
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// Code generated by protoc-gen-go. DO NOT EDIT.
// versions:
// protoc-gen-go v1.30.0
// protoc v3.19.4
// source: quantification-meta.proto
package protos
import (
protoreflect "google.golang.org/protobuf/reflect/protoreflect"
protoimpl "google.golang.org/protobuf/runtime/protoimpl"
reflect "reflect"
sync "sync"
)
const (
// Verify that this generated code is sufficiently up-to-date.
_ = protoimpl.EnforceVersion(20 - protoimpl.MinVersion)
// Verify that runtime/protoimpl is sufficiently up-to-date.
_ = protoimpl.EnforceVersion(protoimpl.MaxVersion - 20)
)
// TODO: Quants likely need to change to accommodate quantifying spectra from multiple
// datasets together??
type QuantStartingParameters struct {
state protoimpl.MessageState
sizeCache protoimpl.SizeCache
unknownFields protoimpl.UnknownFields
UserParams *QuantCreateParams `protobuf:"bytes,1,opt,name=userParams,proto3" json:"userParams,omitempty"`
// This is for when we store/send just the summary, sometimes we only need to supply count for brevity
PmcCount uint32 `protobuf:"varint,2,opt,name=pmcCount,proto3" json:"pmcCount,omitempty"`
// Paths, Buckets, to help runner initialise
ScanFilePath string `protobuf:"bytes,3,opt,name=scanFilePath,proto3" json:"scanFilePath,omitempty"`
DataBucket string `protobuf:"bytes,4,opt,name=dataBucket,proto3" json:"dataBucket,omitempty"`
PiquantJobsBucket string `protobuf:"bytes,5,opt,name=piquantJobsBucket,proto3" json:"piquantJobsBucket,omitempty"`
// How many cores we expect to have on the same node as us!
CoresPerNode uint32 `protobuf:"varint,6,opt,name=coresPerNode,proto3" json:"coresPerNode,omitempty"`
StartUnixTimeSec uint32 `protobuf:"varint,7,opt,name=startUnixTimeSec,proto3" json:"startUnixTimeSec,omitempty"`
RequestorUserId string `protobuf:"bytes,8,opt,name=requestorUserId,proto3" json:"requestorUserId,omitempty"`
PIQUANTVersion string `protobuf:"bytes,9,opt,name=PIQUANTVersion,proto3" json:"PIQUANTVersion,omitempty"`
Comments string `protobuf:"bytes,10,opt,name=comments,proto3" json:"comments,omitempty"`
}
func (x *QuantStartingParameters) Reset() {
*x = QuantStartingParameters{}
if protoimpl.UnsafeEnabled {
mi := &file_quantification_meta_proto_msgTypes[0]
ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
ms.StoreMessageInfo(mi)
}
}
func (x *QuantStartingParameters) String() string {
return protoimpl.X.MessageStringOf(x)
}
func (*QuantStartingParameters) ProtoMessage() {}
func (x *QuantStartingParameters) ProtoReflect() protoreflect.Message {
mi := &file_quantification_meta_proto_msgTypes[0]
if protoimpl.UnsafeEnabled && x != nil {
ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
if ms.LoadMessageInfo() == nil {
ms.StoreMessageInfo(mi)
}
return ms
}
return mi.MessageOf(x)
}
// Deprecated: Use QuantStartingParameters.ProtoReflect.Descriptor instead.
func (*QuantStartingParameters) Descriptor() ([]byte, []int) {
return file_quantification_meta_proto_rawDescGZIP(), []int{0}
}
func (x *QuantStartingParameters) GetUserParams() *QuantCreateParams {
if x != nil {
return x.UserParams
}
return nil
}
func (x *QuantStartingParameters) GetPmcCount() uint32 {
if x != nil {
return x.PmcCount
}
return 0
}
func (x *QuantStartingParameters) GetScanFilePath() string {
if x != nil {
return x.ScanFilePath
}
return ""
}
func (x *QuantStartingParameters) GetDataBucket() string {
if x != nil {
return x.DataBucket
}
return ""
}
func (x *QuantStartingParameters) GetPiquantJobsBucket() string {
if x != nil {
return x.PiquantJobsBucket
}
return ""
}
func (x *QuantStartingParameters) GetCoresPerNode() uint32 {
if x != nil {
return x.CoresPerNode
}
return 0
}
func (x *QuantStartingParameters) GetStartUnixTimeSec() uint32 {
if x != nil {
return x.StartUnixTimeSec
}
return 0
}
func (x *QuantStartingParameters) GetRequestorUserId() string {
if x != nil {
return x.RequestorUserId
}
return ""
}
func (x *QuantStartingParameters) GetPIQUANTVersion() string {
if x != nil {
return x.PIQUANTVersion
}
return ""
}
func (x *QuantStartingParameters) GetComments() string {
if x != nil {
return x.Comments
}
return ""
}
type QuantCreateParams struct {
state protoimpl.MessageState
sizeCache protoimpl.SizeCache
unknownFields protoimpl.UnknownFields
// Depending on this, we may return the result straight away or return a job status
// Valid values at time of writing are:
// "map" - Runs a quant job, to output a map
// "quant" - Runs a quant "fit", a quick job, so we wait and return the result in resp
Command string `protobuf:"bytes,1,opt,name=command,proto3" json:"command,omitempty"`
// Name of the quantification - note for "quant" (aka Fit) mode, this is not needed
Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
// Required, id of scan file to pass to PIQUANT
ScanId string `protobuf:"bytes,3,opt,name=scanId,proto3" json:"scanId,omitempty"`
// List of all PMCs (over wire it should be sent encoded with our simple compression method)
Pmcs []int32 `protobuf:"varint,4,rep,packed,name=pmcs,proto3" json:"pmcs,omitempty"`
// What elements to quantify. NOTE: PIQUANT output will not necessarily match this as
// it may choose to output oxides or carbonates
Elements []string `protobuf:"bytes,5,rep,name=elements,proto3" json:"elements,omitempty"`
// The config of the detector used to capture the scan
DetectorConfig string `protobuf:"bytes,6,opt,name=detectorConfig,proto3" json:"detectorConfig,omitempty"`
// Any extra command line parameters, these are just tacked onto the cmd line
Parameters string `protobuf:"bytes,7,opt,name=parameters,proto3" json:"parameters,omitempty"`
// A "hint" to the PIQUANT runner saying how fast we want it to complete. It should
// then create more or less nodes to run PIQUANT on to try to achieve that run time
RunTimeSec uint32 `protobuf:"varint,8,opt,name=runTimeSec,proto3" json:"runTimeSec,omitempty"`
// What kind of quantification we're creating
QuantMode string `protobuf:"bytes,9,opt,name=quantMode,proto3" json:"quantMode,omitempty"`
// List of all ROI IDs within the scan that we want to quantify. This is required
// so we can output bulk quants for all PMCs in an ROI
// NOTE: If QuantMode = *Bulk, this is used, pmcsEncoded is ignored.
RoiIDs []string `protobuf:"bytes,10,rep,name=roiIDs,proto3" json:"roiIDs,omitempty"`
// Should dwell spectra be included in the quantification calculation
IncludeDwells bool `protobuf:"varint,11,opt,name=includeDwells,proto3" json:"includeDwells,omitempty"`
}
func (x *QuantCreateParams) Reset() {
*x = QuantCreateParams{}
if protoimpl.UnsafeEnabled {
mi := &file_quantification_meta_proto_msgTypes[1]
ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
ms.StoreMessageInfo(mi)
}
}
func (x *QuantCreateParams) String() string {
return protoimpl.X.MessageStringOf(x)
}
func (*QuantCreateParams) ProtoMessage() {}
func (x *QuantCreateParams) ProtoReflect() protoreflect.Message {
mi := &file_quantification_meta_proto_msgTypes[1]
if protoimpl.UnsafeEnabled && x != nil {
ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
if ms.LoadMessageInfo() == nil {
ms.StoreMessageInfo(mi)
}
return ms
}
return mi.MessageOf(x)
}
// Deprecated: Use QuantCreateParams.ProtoReflect.Descriptor instead.
func (*QuantCreateParams) Descriptor() ([]byte, []int) {
return file_quantification_meta_proto_rawDescGZIP(), []int{1}
}
func (x *QuantCreateParams) GetCommand() string {
if x != nil {
return x.Command
}
return ""
}
func (x *QuantCreateParams) GetName() string {
if x != nil {
return x.Name
}
return ""
}
func (x *QuantCreateParams) GetScanId() string {
if x != nil {
return x.ScanId
}
return ""
}
func (x *QuantCreateParams) GetPmcs() []int32 {
if x != nil {
return x.Pmcs
}
return nil
}
func (x *QuantCreateParams) GetElements() []string {
if x != nil {
return x.Elements
}
return nil
}
func (x *QuantCreateParams) GetDetectorConfig() string {
if x != nil {
return x.DetectorConfig
}
return ""
}
func (x *QuantCreateParams) GetParameters() string {
if x != nil {
return x.Parameters
}
return ""
}
func (x *QuantCreateParams) GetRunTimeSec() uint32 {
if x != nil {
return x.RunTimeSec
}
return 0
}
func (x *QuantCreateParams) GetQuantMode() string {
if x != nil {
return x.QuantMode
}
return ""
}
func (x *QuantCreateParams) GetRoiIDs() []string {
if x != nil {
return x.RoiIDs
}
return nil
}
func (x *QuantCreateParams) GetIncludeDwells() bool {
if x != nil {
return x.IncludeDwells
}
return false
}
type QuantificationSummary struct {
state protoimpl.MessageState
sizeCache protoimpl.SizeCache
unknownFields protoimpl.UnknownFields
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty" bson:"_id,omitempty"`
ScanId string `protobuf:"bytes,5,opt,name=scanId,proto3" json:"scanId,omitempty"`
Params *QuantStartingParameters `protobuf:"bytes,2,opt,name=params,proto3" json:"params,omitempty"`
Elements []string `protobuf:"bytes,3,rep,name=elements,proto3" json:"elements,omitempty"`
Status *JobStatus `protobuf:"bytes,4,opt,name=status,proto3" json:"status,omitempty"` // TODO: Make this also contain *APIObjectItem and remove its own Shared field...
// Only sent out by API, not stored in DB this way
Owner *OwnershipSummary `protobuf:"bytes,10,opt,name=owner,proto3" json:"owner,omitempty" bson:"-"`
}
func (x *QuantificationSummary) Reset() {
*x = QuantificationSummary{}
if protoimpl.UnsafeEnabled {
mi := &file_quantification_meta_proto_msgTypes[2]
ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
ms.StoreMessageInfo(mi)
}
}
func (x *QuantificationSummary) String() string {
return protoimpl.X.MessageStringOf(x)
}
func (*QuantificationSummary) ProtoMessage() {}
func (x *QuantificationSummary) ProtoReflect() protoreflect.Message {
mi := &file_quantification_meta_proto_msgTypes[2]
if protoimpl.UnsafeEnabled && x != nil {
ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
if ms.LoadMessageInfo() == nil {
ms.StoreMessageInfo(mi)
}
return ms
}
return mi.MessageOf(x)
}
// Deprecated: Use QuantificationSummary.ProtoReflect.Descriptor instead.
func (*QuantificationSummary) Descriptor() ([]byte, []int) {
return file_quantification_meta_proto_rawDescGZIP(), []int{2}
}
func (x *QuantificationSummary) GetId() string {
if x != nil {
return x.Id
}
return ""
}
func (x *QuantificationSummary) GetScanId() string {
if x != nil {
return x.ScanId
}
return ""
}
func (x *QuantificationSummary) GetParams() *QuantStartingParameters {
if x != nil {
return x.Params
}
return nil
}
func (x *QuantificationSummary) GetElements() []string {
if x != nil {
return x.Elements
}
return nil
}
func (x *QuantificationSummary) GetStatus() *JobStatus {
if x != nil {
return x.Status
}
return nil
}
func (x *QuantificationSummary) GetOwner() *OwnershipSummary {
if x != nil {
return x.Owner
}
return nil
}
var File_quantification_meta_proto protoreflect.FileDescriptor
var file_quantification_meta_proto_rawDesc = []byte{
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}
var (
file_quantification_meta_proto_rawDescOnce sync.Once
file_quantification_meta_proto_rawDescData = file_quantification_meta_proto_rawDesc
)
func file_quantification_meta_proto_rawDescGZIP() []byte {
file_quantification_meta_proto_rawDescOnce.Do(func() {
file_quantification_meta_proto_rawDescData = protoimpl.X.CompressGZIP(file_quantification_meta_proto_rawDescData)
})
return file_quantification_meta_proto_rawDescData
}
var file_quantification_meta_proto_msgTypes = make([]protoimpl.MessageInfo, 3)
var file_quantification_meta_proto_goTypes = []interface{}{
(*QuantStartingParameters)(nil), // 0: QuantStartingParameters
(*QuantCreateParams)(nil), // 1: QuantCreateParams
(*QuantificationSummary)(nil), // 2: QuantificationSummary
(*JobStatus)(nil), // 3: JobStatus
(*OwnershipSummary)(nil), // 4: OwnershipSummary
}
var file_quantification_meta_proto_depIdxs = []int32{
1, // 0: QuantStartingParameters.userParams:type_name -> QuantCreateParams
0, // 1: QuantificationSummary.params:type_name -> QuantStartingParameters
3, // 2: QuantificationSummary.status:type_name -> JobStatus
4, // 3: QuantificationSummary.owner:type_name -> OwnershipSummary
4, // [4:4] is the sub-list for method output_type
4, // [4:4] is the sub-list for method input_type
4, // [4:4] is the sub-list for extension type_name
4, // [4:4] is the sub-list for extension extendee
0, // [0:4] is the sub-list for field type_name
}
func init() { file_quantification_meta_proto_init() }
func file_quantification_meta_proto_init() {
if File_quantification_meta_proto != nil {
return
}
file_job_proto_init()
file_ownership_access_proto_init()
if !protoimpl.UnsafeEnabled {
file_quantification_meta_proto_msgTypes[0].Exporter = func(v interface{}, i int) interface{} {
switch v := v.(*QuantStartingParameters); i {
case 0:
return &v.state
case 1:
return &v.sizeCache
case 2:
return &v.unknownFields
default:
return nil
}
}
file_quantification_meta_proto_msgTypes[1].Exporter = func(v interface{}, i int) interface{} {
switch v := v.(*QuantCreateParams); i {
case 0:
return &v.state
case 1:
return &v.sizeCache
case 2:
return &v.unknownFields
default:
return nil
}
}
file_quantification_meta_proto_msgTypes[2].Exporter = func(v interface{}, i int) interface{} {
switch v := v.(*QuantificationSummary); i {
case 0:
return &v.state
case 1:
return &v.sizeCache
case 2:
return &v.unknownFields
default:
return nil
}
}
}
type x struct{}
out := protoimpl.TypeBuilder{
File: protoimpl.DescBuilder{
GoPackagePath: reflect.TypeOf(x{}).PkgPath(),
RawDescriptor: file_quantification_meta_proto_rawDesc,
NumEnums: 0,
NumMessages: 3,
NumExtensions: 0,
NumServices: 0,
},
GoTypes: file_quantification_meta_proto_goTypes,
DependencyIndexes: file_quantification_meta_proto_depIdxs,
MessageInfos: file_quantification_meta_proto_msgTypes,
}.Build()
File_quantification_meta_proto = out.File
file_quantification_meta_proto_rawDesc = nil
file_quantification_meta_proto_goTypes = nil
file_quantification_meta_proto_depIdxs = nil
}