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testQuantGetListDelete.go
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testQuantGetListDelete.go
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package main
import (
"fmt"
"log"
"github.com/pixlise/core/v4/core/wstestlib"
protos "github.com/pixlise/core/v4/generated-protos"
)
func testQuantGetListDelete(apiHost string) {
scanId := "the-scan-id"
quantId := "3vjoovnrhkhv8ecd"
quantLogs := []string{
"node00001_piquant.log",
"node00001_stdout.log",
"node00002_piquant.log",
"node00002_stdout.log",
"node00003_piquant.log",
"node00003_stdout.log",
"node00004_piquant.log",
"node00004_stdout.log",
"node00005_piquant.log",
"node00005_stdout.log",
"node00006_piquant.log",
"node00006_stdout.log",
"node00007_piquant.log",
"node00007_stdout.log",
}
seedDBQuants([]*protos.QuantificationSummary{
{
Id: quantId,
ScanId: scanId,
Params: &protos.QuantStartingParameters{
UserParams: &protos.QuantCreateParams{
Command: "",
Name: "Trial quant with Rh",
ScanId: scanId,
Elements: []string{
"CO3",
"Rh",
"Na",
"Mg",
"Al",
"Si",
"P",
"S",
"Cl",
"K",
"Ca",
"Ti",
"Cr",
"Mn",
"Fe",
},
DetectorConfig: "PIXL/PiquantConfigs/v7",
Parameters: "",
RunTimeSec: 60,
QuantMode: "AB",
RoiIDs: []string{},
IncludeDwells: false,
},
PmcCount: 100,
ScanFilePath: "Datasets/" + scanId + "/dataset.bin",
DataBucket: "databucket",
PiquantJobsBucket: "piquantbucket",
CoresPerNode: 4,
StartUnixTimeSec: 1652813392,
RequestorUserId: "auth0|5df311ed8a0b5d0ebf5fb476",
PIQUANTVersion: "registry.gitlab.com/pixlise/piquant/runner:3.2.8",
Comments: "",
},
Elements: []string{
"Rh2O3",
"Na2O",
"MgCO3",
"Al2O3",
"SiO2",
"P2O5",
"SO3",
"Cl",
"K2O",
"CaCO3",
"TiO2",
"Cr2O3",
"MnCO3",
"FeCO3-T",
},
Status: &protos.JobStatus{
JobId: quantId,
Status: 5,
Message: "Nodes ran: 7",
EndUnixTimeSec: 1652813627,
OutputFilePath: "UserContent/5df311ed8a0b5d0ebf5fb476/089063943/Quantifications",
OtherLogFiles: quantLogs,
},
},
})
seedDBOwnership(quantId, protos.ObjectType_OT_QUANTIFICATION, nil, nil)
u1 := wstestlib.MakeScriptedTestUser(auth0Params)
u1.AddConnectAction("Connect", &wstestlib.ConnectInfo{
Host: apiHost,
User: test1Username,
Pass: test1Password,
})
u1.AddSendReqAction("List quants",
`{"quantListReq":{}}`,
`{"msgId":1,"status":"WS_OK","quantListResp":{}}`,
)
u1.AddSendReqAction("Get with missing ID",
`{"quantGetReq":{}}`,
`{"msgId":2,"status":"WS_NOT_FOUND","errorText": " not found", "quantGetResp":{}}`,
)
u1.AddSendReqAction("Get non-existant quant",
`{"quantGetReq":{"quantId": "non-existant-id"}}`,
`{"msgId":3,"status":"WS_NOT_FOUND","errorText": "non-existant-id not found", "quantGetResp":{}}`,
)
u1.AddSendReqAction("Get quant from db (should fail, permissions dont allow)",
fmt.Sprintf(`{"quantGetReq":{"quantId": "%v"}}`, quantId),
fmt.Sprintf(`{
"msgId":4,"status":"WS_NO_PERMISSION",
"errorText": "View access denied for: OT_QUANTIFICATION (%v)", "quantGetResp":{}}`, quantId),
)
u1.CloseActionGroup([]string{}, 5000)
wstestlib.ExecQueuedActions(&u1)
// Ensure files aren't there in S3 at this point
// NOTE: This test was unfortunately written for a slightly weird scan that was copied between user accounts
// so the username in the path is not the expected u1.GetUserId() one!
// filepaths.GetQuantPath(u1.GetUserId(), scanId, quantId+".bin")
// Which evaluates to:
// Quantifications/089063943/u1.GetUserId()/3vjoovnrhkhv8ecd.bin
// but it's the one referenced in the quant summary:
// UserContent/5df311ed8a0b5d0ebf5fb476/089063943/Quantifications/3vjoovnrhkhv8ecd.bin
// Which means we need to override the user id here:
thisQuantRootPath := "UserContent/5df311ed8a0b5d0ebf5fb476/089063943/Quantifications/"
err := apiStorageFileAccess.DeleteObject(apiUsersBucket, thisQuantRootPath+quantId+".bin")
if err != nil {
log.Fatalln(err)
}
// Now add u1 as a viewer
seedDBOwnership(quantId, protos.ObjectType_OT_QUANTIFICATION, &protos.UserGroupList{UserIds: []string{u1.GetUserId()}}, nil)
u1.AddSendReqAction("List quants",
`{"quantListReq":{}}`,
fmt.Sprintf(`{"msgId": 5, "status": "WS_OK", "quantListResp": {
"quants": [{
"id": "%v",
"scanId": "the-scan-id",
"params": {
"userParams": {
"name": "Trial quant with Rh",
"scanId": "the-scan-id",
"elements": ["CO3","Rh","Na","Mg","Al","Si","P","S","Cl","K","Ca","Ti","Cr","Mn","Fe"],
"detectorConfig": "PIXL/PiquantConfigs/v7",
"runTimeSec": 60,
"quantMode": "AB"
},
"dataBucket": "databucket",
"scanFilePath": "Datasets/the-scan-id/dataset.bin",
"piquantJobsBucket": "piquantbucket",
"pmcCount": 100,
"coresPerNode": 4,
"startUnixTimeSec": 1652813392,
"requestorUserId": "auth0|5df311ed8a0b5d0ebf5fb476",
"PIQUANTVersion": "registry.gitlab.com/pixlise/piquant/runner:3.2.8"
},
"elements": ["Rh2O3","Na2O","MgCO3","Al2O3","SiO2","P2O5","SO3","Cl","K2O","CaCO3","TiO2","Cr2O3","MnCO3","FeCO3-T"],
"status": {
"jobId": "%v",
"status": "COMPLETE",
"message": "Nodes ran: 7",
"endUnixTimeSec": 1652813627,
"outputFilePath": "UserContent/5df311ed8a0b5d0ebf5fb476/089063943/Quantifications",
"otherLogFiles": ["node00001_piquant.log","node00001_stdout.log","node00002_piquant.log","node00002_stdout.log","node00003_piquant.log","node00003_stdout.log","node00004_piquant.log","node00004_stdout.log","node00005_piquant.log","node00005_stdout.log","node00006_piquant.log","node00006_stdout.log","node00007_piquant.log","node00007_stdout.log"]
},
"owner": {
"creatorUser": {},
"createdUnixSec": 1646262426,
"viewerUserCount": 1,
"sharedWithOthers": true
}
}]
}}`, quantId, quantId),
)
u1.AddSendReqAction("Get quant summary only (should work)",
fmt.Sprintf(`{"quantGetReq":{"quantId": "%v", "summaryOnly": true }}`, quantId),
fmt.Sprintf(`{"msgId":6,"status":"WS_OK", "quantGetResp":{
"summary": {
"id": "%v",
"scanId": "the-scan-id",
"params": {
"userParams": {
"name": "Trial quant with Rh",
"scanId": "the-scan-id",
"elements": ["CO3","Rh","Na","Mg","Al","Si","P","S","Cl","K","Ca","Ti","Cr","Mn","Fe"],
"detectorConfig": "PIXL/PiquantConfigs/v7",
"runTimeSec": 60,
"quantMode": "AB"
},
"dataBucket": "databucket",
"scanFilePath": "Datasets/the-scan-id/dataset.bin",
"piquantJobsBucket": "piquantbucket",
"pmcCount": 100,
"coresPerNode": 4,
"startUnixTimeSec": 1652813392,
"requestorUserId": "auth0|5df311ed8a0b5d0ebf5fb476",
"PIQUANTVersion": "registry.gitlab.com/pixlise/piquant/runner:3.2.8"
},
"elements": ["Rh2O3","Na2O","MgCO3","Al2O3","SiO2","P2O5","SO3","Cl","K2O","CaCO3","TiO2","Cr2O3","MnCO3","FeCO3-T"],
"status": {
"jobId": "%v",
"status": "COMPLETE",
"message": "Nodes ran: 7",
"endUnixTimeSec": 1652813627,
"outputFilePath": "UserContent/5df311ed8a0b5d0ebf5fb476/089063943/Quantifications",
"otherLogFiles": ["node00001_piquant.log","node00001_stdout.log","node00002_piquant.log","node00002_stdout.log","node00003_piquant.log","node00003_stdout.log","node00004_piquant.log","node00004_stdout.log","node00005_piquant.log","node00005_stdout.log","node00006_piquant.log","node00006_stdout.log","node00007_piquant.log","node00007_stdout.log"]
},
"owner": {
"creatorUser": {},
"createdUnixSec": 1646262426,
"viewerUserCount": 1,
"sharedWithOthers": true
}
}
}}`, quantId, quantId),
)
u1.AddSendReqAction("Get quant summary+data (should fail, no file in S3)",
fmt.Sprintf(`{"quantGetReq":{"quantId": "%v" }}`, quantId),
fmt.Sprintf(`{"msgId":7,"status":"WS_NOT_FOUND", "errorText": "%v not found", "quantGetResp":{}}`, quantId),
)
u1.CloseActionGroup([]string{}, 5000)
wstestlib.ExecQueuedActions(&u1)
// As above, this quant has slightly "weird" paths...
seedS3File(quantId+".bin", thisQuantRootPath+quantId+".bin", apiUsersBucket)
seedS3File(quantId+".csv", thisQuantRootPath+quantId+".csv", apiUsersBucket)
for _, logFile := range quantLogs {
seedS3File("./"+quantId+"-logs/"+logFile, thisQuantRootPath+quantId+"-logs/"+logFile, apiUsersBucket)
}
u1.AddSendReqAction("Get quant summary+data (should work)",
fmt.Sprintf(`{"quantGetReq":{"quantId": "%v" }}`, quantId),
fmt.Sprintf(`{"msgId":8,"status":"WS_OK", "quantGetResp":{
"summary": {
"id": "%v",
"scanId": "the-scan-id",
"params": {
"userParams": {
"name": "Trial quant with Rh",
"scanId": "the-scan-id",
"elements": ["CO3","Rh","Na","Mg","Al","Si","P","S","Cl","K","Ca","Ti","Cr","Mn","Fe"],
"runTimeSec": 60,
"quantMode": "AB",
"detectorConfig": "PIXL/PiquantConfigs/v7"
},
"dataBucket": "databucket",
"scanFilePath": "Datasets/the-scan-id/dataset.bin",
"piquantJobsBucket": "piquantbucket",
"pmcCount": 100,
"coresPerNode": 4,
"startUnixTimeSec": 1652813392,
"requestorUserId": "auth0|5df311ed8a0b5d0ebf5fb476",
"PIQUANTVersion": "registry.gitlab.com/pixlise/piquant/runner:3.2.8"
},
"elements": ["Rh2O3","Na2O","MgCO3","Al2O3","SiO2","P2O5","SO3","Cl","K2O","CaCO3","TiO2","Cr2O3","MnCO3","FeCO3-T"],
"status": {
"jobId": "%v",
"status": "COMPLETE",
"message": "Nodes ran: 7",
"endUnixTimeSec": 1652813627,
"outputFilePath": "UserContent/5df311ed8a0b5d0ebf5fb476/089063943/Quantifications",
"otherLogFiles": ["node00001_piquant.log","node00001_stdout.log","node00002_piquant.log","node00002_stdout.log","node00003_piquant.log","node00003_stdout.log","node00004_piquant.log","node00004_stdout.log","node00005_piquant.log","node00005_stdout.log","node00006_piquant.log","node00006_stdout.log","node00007_piquant.log","node00007_stdout.log"]
},
"owner": {
"creatorUser": {},
"createdUnixSec": 1646262426,
"viewerUserCount": 1,
"sharedWithOthers": true
}
},
"data": {
"labels": [
"Rh2O3_%%",
"Na2O_%%",
"MgCO3_%%",
"Al2O3_%%",
"SiO2_%%",
"P2O5_%%",
"SO3_%%",
"Cl_%%",
"K2O_%%",
"CaCO3_%%",
"TiO2_%%",
"Cr2O3_%%",
"MnCO3_%%",
"FeCO3-T_%%",
"Rh2O3_int",
"Na2O_int",
"MgCO3_int",
"Al2O3_int",
"SiO2_int",
"P2O5_int",
"SO3_int",
"Cl_int",
"K2O_int",
"CaCO3_int",
"TiO2_int",
"Cr2O3_int",
"MnCO3_int",
"FeCO3-T_int",
"Rh2O3_err",
"Na2O_err",
"MgCO3_err",
"Al2O3_err",
"SiO2_err",
"P2O5_err",
"SO3_err",
"Cl_err",
"K2O_err",
"CaCO3_err",
"TiO2_err",
"Cr2O3_err",
"MnCO3_err",
"FeCO3-T_err",
"total_counts",
"livetime",
"chisq",
"eVstart",
"eV/ch",
"res",
"iter",
"Events",
"Triggers"
],
"types": [
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_INT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_FLOAT",
"QT_INT",
"QT_INT",
"QT_INT",
"QT_INT"
],
"locationSet": [
{
"detector": "A",
"location${LIST,MODE=CONTAINS,LENGTH=143}": [
{
"pmc": 86,
"values": [
{
"fvalue": -1
},
{
"fvalue": 1.0083
},
{
"fvalue": 37.8801
},
{
"fvalue": 0.5924
},
{
"fvalue": 14.7764
},
{
"fvalue": 0.0129
},
{
"fvalue": 0.6127
},
{
"fvalue": 0.9561
},
{},
{
"fvalue": 3.9732
},
{},
{},
{
"fvalue": 1.1172
},
{
"fvalue": 41.825
},
{},
{
"fvalue": 6.3
},
{
"fvalue": 745.5
},
{
"fvalue": 66.5
},
{
"fvalue": 4243.8
},
{
"fvalue": 6.4
},
{
"fvalue": 602.8
},
{
"fvalue": 1911.1
},
{},
{
"fvalue": 3643.5
},
{},
{},
{
"fvalue": 2318.3
},
{
"fvalue": 79901.1
},
{},
{
"fvalue": 1.6
},
{
"fvalue": 2.4
},
{
"fvalue": 0.2
},
{
"fvalue": 0.8
},
{},
{
"fvalue": 0.2
},
{
"fvalue": 0.3
},
{},
{
"fvalue": 0.5
},
{},
{},
{
"fvalue": 0.4
},
{
"fvalue": 2.1
},
{
"ivalue": 109490
},
{
"fvalue": 9.12
},
{
"fvalue": 0.64
},
{
"fvalue": -24.4
},
{
"fvalue": 7.8811
},
{
"ivalue": 178
},
{
"ivalue": 23
},
{},
{}
]
}
]
},
{
"detector": "B",
"location${LIST,MODE=LENGTH,LENGTH=143}": []
}
]
}
}}`, quantId, quantId),
)
u1.AddSendReqAction("Delete non-existant quant (should fail)",
`{"quantDeleteReq":{"quantId": "non-existant-quant" }}`,
`{"msgId":9,"status":"WS_NOT_FOUND", "errorText": "non-existant-quant not found", "quantDeleteResp":{}}`,
)
u1.AddSendReqAction("Delete quant (should fail, we're viewers!)",
fmt.Sprintf(`{"quantDeleteReq":{"quantId": "%v" }}`, quantId),
fmt.Sprintf(`{"msgId":10,"status":"WS_NO_PERMISSION", "errorText": "Edit access denied for: OT_QUANTIFICATION (%v)", "quantDeleteResp":{}}`, quantId),
)
u1.CloseActionGroup([]string{}, 5000)
wstestlib.ExecQueuedActions(&u1)
u2 := wstestlib.MakeScriptedTestUser(auth0Params)
u2.AddConnectAction("Connect user 2", &wstestlib.ConnectInfo{
Host: apiHost,
User: test2Username,
Pass: test2Password,
})
u2.AddSendReqAction("User2: List quants",
`{"quantListReq":{}}`,
`{"msgId":1,"status":"WS_OK","quantListResp":{}}`,
)
u2.AddSendReqAction("User2: Get quant from db (should fail, permissions dont allow)",
fmt.Sprintf(`{"quantGetReq":{"quantId": "%v"}}`, quantId),
fmt.Sprintf(`{
"msgId":2,"status":"WS_NO_PERMISSION",
"errorText": "View access denied for: OT_QUANTIFICATION (%v)", "quantGetResp":{}}`, quantId),
)
u2.CloseActionGroup([]string{}, 5000)
wstestlib.ExecQueuedActions(&u2)
// Set as editor
seedDBOwnership(quantId, protos.ObjectType_OT_QUANTIFICATION, nil, &protos.UserGroupList{UserIds: []string{u1.GetUserId()}})
u1.AddSendReqAction("Delete quant (should work)",
fmt.Sprintf(`{"quantDeleteReq":{"quantId": "%v" }}`, quantId),
`{"msgId":11,"status":"WS_OK", "quantDeleteResp":{}}`,
)
u1.AddSendReqAction("Get quant (should fail, not in db)",
fmt.Sprintf(`{"quantGetReq":{"quantId": "%v" }}`, quantId),
fmt.Sprintf(`{"msgId":12,"status":"WS_NOT_FOUND", "errorText": "%v not found", "quantGetResp":{}}`, quantId),
)
u1.CloseActionGroup([]string{
fmt.Sprintf(`{"notificationUpd": {"notification": { "notificationType": "NT_SYS_DATA_CHANGED", "quantId":"%v"}}}`, quantId),
}, 5000)
wstestlib.ExecQueuedActions(&u1)
}