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piyalkarum · Mar 19, 2024 · eed21a4 · eed21a4
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diff --git a/docs/articles/rCNV.html b/docs/articles/rCNV.html
diff --git a/docs/deps/bootstrap-5.2.2/bootstrap.min.css b/docs/deps/bootstrap-5.2.2/bootstrap.min.css
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -3,5 +3,5 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   rCNV: rCNV.html
-last_built: 2023-08-08T12:41Z
+last_built: 2024-03-19T12:12Z
 
diff --git a/docs/reference/Rplot002.png b/docs/reference/Rplot002.png
diff --git a/docs/reference/Rplot003.png b/docs/reference/Rplot003.png
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/vst-2.png b/docs/reference/vst-2.png
diff --git a/docs/reference/vst.html b/docs/reference/vst.html
diff --git a/docs/reference/vstPermutation-1.png b/docs/reference/vstPermutation-1.png
diff --git a/docs/reference/vstPermutation-2.png b/docs/reference/vstPermutation-2.png
diff --git a/docs/reference/vstPermutation-3.png b/docs/reference/vstPermutation-3.png
diff --git a/docs/reference/vstPermutation.html b/docs/reference/vstPermutation.html
diff --git a/docs/search.json b/docs/search.json
diff --git a/docs/sitemap.xml b/docs/sitemap.xml
@@ -102,4 +102,7 @@
   <url>
     <loc>/reference/vst.html</loc>
   </url>
+  <url>
+    <loc>/reference/vstPermutation.html</loc>
+  </url>
 </urlset>
diff --git a/vignettes/rCNV.Rmd b/vignettes/rCNV.Rmd
@@ -288,7 +288,9 @@ pops<-substr(colnames(dd),1,4)
 dd<-data.frame(vdata[,1:4],dd)
 Vs<-vst(dd,pops=pops,verbose=F)
 ```
-Fig. 3.1. Vst network qgraph generated from the Vst values for each lobster population. Circles represent populations and the green arrows show similarity and the direction.See `qgraph` help for the interpretation of the network analysis.
+Fig. 3.1. Vst network qgraph generated from the Vst values for each lobster population. Circles represent populations and the green arrows show similarity and the direction.See `qgraph` help for the interpretation of the network analysis.  
+
+NOTE: You can also run a permutation test (using `vstPermutation`) on the vst calculation to test the randomness of the vst.
 
 ### 3.2 Relative copy number
 TBA