NucleaseIndelActivity

Automation for the quantification of indels arising due to nuclease activity

###Desired components for future:

• make an option for the user so that all alignments (output) could be generated in either SAM or BAM format.

###Change Log:

v1.0.1:

• Added multi-threading support in BWA, FLASH and Samtools
• Added option to remove intermediate files/folders (will only generate alignments and indels)

v1:

• Added help function for identifying dependency installations.