Release 0.0.4

VERSION

@@ -1 +1 @@
-0.0.4rc2
+0.0.4

install.sh

@@ -4,20 +4,26 @@
 #
 # to build for Perl:
 #
-#   ./install.sh -DBUILD_PERL:BOOLEAN=TRUE 
+#   ./install.sh
 #
 # to build one library mapping for Perl:
 #
-#   ./install.sh -DSTADEN_LIB:BOOLEAN=TRUE -DBUILD_PERL:BOOLEAN=TRUE 
+#   ./install.sh --with-staden
 #
+# to build for Ruby:
+#
+#   ./install.sh --with-ruby
+#
+# to build for Python
+#
+#   ./install.sh --with-python
 
-if [ ! -d cmake_modules ]; then
+if [ ! -e PROJECTNAME ]; then
   echo "Only run from BioLib top-level directory"
   exit 1
 fi
 
-sh scripts/cleanup.sh
-cmake $* .
+./configure $*
 make
 make test
 echo "-- No errors? Run 'make install' to complete the installation"

packages/source_pkg/Rakefile

@@ -10,27 +10,30 @@ desc "Package BioLib"
 task :default => [:clean, :package]
 
 task :package do
-  raise 'Run from source root only!' if !File.exist?('cmake_modules')
+  raise 'Run from source root only!' if !File.exist?('doc/BUILD.txt')
 	packagedir=packagename
 	mkdir packagedir
   patterns = [
 		'scripts/*',
     'doc/*.txt',
     'Rakefile',
 		'install.sh',
-    'LICENSE', 'README', 'VERSION', 'INSTALL', 'TODO',
+		'configure',
+    'LICENSE', 'README', 'VERSION', 'INSTALL', 'TODO', 'PROJECTNAME',
 		'**/CMakeLists.txt',
-		'cmake_modules/*',
+		'tools/*/*/*',
+		'contrib/*',
 		'doc/*.txt',
+		'src/extra/*/*/*',
 		'src/clibs/biolib*/**/*.{h,c,txt}',
 		'src/clibs/example-*/*.{h,c,txt}',
 		'src/clibs/affyio-*/src/*.{h,c,txt}',
 		'src/clibs/staden_io_lib-*/io_lib/*.{h,c,txt}',
-		'src/biolib/**/*.rb',
-		'src/biolib/**/*.pl',
+		'src/biolib/**/*.{rb,pl,py}',
 		'src/mappings/swig/*.i',
 		'src/mappings/swig/ruby/**/*.{rb,i}',
 		'src/mappings/swig/perl/**/*.{pl,i}',
+		'src/mappings/swig/python/**/*.{py,i}',
 		'src/test/data/**/*/*/*'
   ]