run_ecosis_pull_example #65
Workflow file for this run
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| name: run_ecosis_pull_example | |
| on: | |
| schedule: | |
| - cron: '15 1 */5 * *' | |
| env: | |
| R_LIBS_USER: /usr/local/lib/R/site-library | |
| LC_ALL: en_US.UTF-8 | |
| NCPUS: 2 | |
| jobs: | |
| run-plsr: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| steps: | |
| #check out source code | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| Rscript -e 'remotes::install_github(repo="TESTgroup-BNL/spectratrait", dependencies=TRUE)' | |
| # Run R script | |
| - name: Run EcoSIS API Pull Example | |
| run: | | |
| source("inst/scripts/pull_data_from_ecosis.R") | |
| shell: Rscript {0} |