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Excluding Reachabilities #38

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Excluding Reachabilities #38

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20 changes: 14 additions & 6 deletions pyRN/SAE/plot_markov.py
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Original file line number Diff line number Diff line change
Expand Up @@ -108,8 +108,10 @@ def draw_nodes(G, abstractions_df, ax):
nodes = list(G.nodes())

maintainabilities = [abstractions_df.loc[n, 'maintainability'] for n in nodes]
reachabilities = [abstractions_df.loc[n, 'reachability'] for n in nodes]
#reachabilities = [abstractions_df.loc[n, 'reachability'] for n in nodes]
scaled_maintainability = [maintainabilities[i]/max(maintainabilities)*2500 for i in range(len(maintainabilities))]

'''
scaled_reachability = [reachabilities[i]/max(reachabilities)*2500 for i in range(len(reachabilities))]
scaled_reachability = [2500-r for r in scaled_reachability]

Expand All @@ -127,11 +129,15 @@ def draw_nodes(G, abstractions_df, ax):
networkx.draw_networkx_nodes(G, pos, nodelist=rb, node_size=rbs, node_color="#00ff00", alpha=0.8, ax=ax)
networkx.draw_networkx_nodes(G, pos, nodelist=rs, node_size=rss, node_color="#00ff00", alpha=0.8, ax=ax)
networkx.draw_networkx_nodes(G, pos, nodelist=ms, node_size=mss, node_color="#b000b0", alpha=0.8, ax=ax)

line1 = matplotlib.lines.Line2D(range(5), range(5), color="white", marker='o', markerfacecolor="#00ff00")
'''

networkx.draw_networkx_nodes(G, pos, nodelist=nodes, node_size=scaled_maintainability, node_color="#b000b0", alpha=0.8, ax=ax)

#line1 = matplotlib.lines.Line2D(range(5), range(5), color="white", marker='o', markerfacecolor="#00ff00")
line2 = matplotlib.lines.Line2D(range(5), range(5), color="white", marker='o', markerfacecolor="#b000b0")

return (line1, line2)
#return (line1, line2)
return line2

def draw_subset_relationships(G, ax):

Expand All @@ -154,7 +160,8 @@ def draw_graph(subplot, G, abstractions_df):

# Draw nodes with markov properties
# layer1, layer2 = draw_nodes(G, abstractions_df,ax)
layer1, layer2 = draw_nodes(G, abstractions_df,subplot)
# layer1, layer2 = draw_nodes(G, abstractions_df,subplot)
layer1 = draw_nodes(G, abstractions_df,subplot)

# Draw subset relationships
# layer3 = draw_subset_relationships(G,ax)
Expand All @@ -169,7 +176,8 @@ def draw_graph(subplot, G, abstractions_df):
# ax.set_ylabel('Number of species')
subplot.tick_params(left=True, labelleft=True)
subplot.set_ylabel('Number of species')
matplotlib.pyplot.legend((layer1,layer2,layer3, layer4),("Reachability","Maintainability","Subset relationship","Transition (width~probability)"))
#matplotlib.pyplot.legend((layer1,layer2,layer3, layer4),("Reachability","Maintainability","Subset relationship","Transition (width~probability)"))
matplotlib.pyplot.legend((layer1,layer3, layer4),("Maintainability","Subset relationship","Transition (width~probability)"))
# matplotlib.pyplot.show()
# return fig, ax

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