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Update README.md
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pmartinezarbizu committed Jan 12, 2019
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Expand Up @@ -8,6 +8,10 @@ pairwise.adonis2
This is a wrapper function for multilevel pairwise comparison using adonis (~Permanova) from package 'vegan'. The function returns adjusted p-values using p.adjust(). It does not accept interaction between factors neither strata.

# pairwise.adonis2

NOTE: This is still a raw developing version -- results may not be rigth.
I would appreciate feed back.

This function accepts a model formula like in adonis from vegan. You can use interactions between factors and define strata to constrain permutations. For pairwise comparison a list of unique pairwise combination of factors is produced. Then for each pair, following objects are reduced accordingly to include only the subset of cases belonging to the pair:

- the left hand side of the formula (dissimilarity matrix or community matrix)
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