Definitive endoderm differentiation of human embryonic stem cells in early G1 phase of the cell cycle
Source code of the manuscript:
Madrigal P, et al. Epigenetic and transcriptional regulations prime cell fate before division during human pluripotent stem cell differentiation Nature Communications 2023
All processed genome-wide datasets are publicly accessible in a genome browser at http://ngs.sanger.ac.uk/production/endoderm
A backup copy of the processed data files has been deposited in Zenodo (chip, atac, rna).
Gene expression data is also available at EMBL-EBI's resource Expression Atlas.
Raw datasets are publicly available in the ArrayExpress collection of BioStudies.
For questions on the computational analysis: Pedro Madrigal. For questions on the experimental work: Siim Pauklin