Bug in Differentiable Tpfa related to fracture tips and internal boundaries

[keileg]

Proposed changes

The previous implementation of differentiable Tpfa contained a bug which gave non-zero transmissibilities on fracture tips and internal boundaries (where the transmissibilities should be zero, but were not). This PR introduces a fix which by filtering sets the transmissibilites to zero at the relevant faces.

A similar fix was also introduced for the potential_trace function, but this is only relevant for the fracture tips.

A new test that covers the fixed code has been added.

Resolves #1104
Resolves #1107
Resolves #1108

Types of changes

What types of changes does this PR introduce to PorePy?
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• Minor change (e.g., dependency bumps, broken links).
• Bugfix (non-breaking change which fixes an issue).
• New feature (non-breaking change which adds functionality).
• Breaking change (fix or feature that would cause existing functionality to not work as expected).
• Testing (contribution related to testing of existing or new functionality).
• Documentation (contribution related to adding, improving, or fixing documentation).
• Maintenance (e.g., improve logic and performance, remove obsolete code).
• Other:

Checklist

Put an x in the boxes that apply or explain briefly why the box is not relevant.

• The documentation is up-to-date.
• Static typing is included in the update.
• This PR does not duplicate existing functionality.
• The update is covered by the test suite (including tests added in the PR).
• If new skipped tests have been introduced in this PR, pytest was run with the --run-skipped flag.

[IvarStefansson]

Thanks! One bugfix (pushed) and one substantial question.