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correct IIT atlas link
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tashrifbillah committed Apr 23, 2019
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Expand Up @@ -468,7 +468,7 @@ In details:
* reference data is proprocessed, and registered to reference template space and then to MNI space ([IITmean_FA.nii.gz](https://www.nitrc.org/frs/download.php/6898/IITmean_FA.nii.gz))
* unprocessed target data is directly registered to MNI space
* harmonized target data is registered to target template space and then to MNI space
* once the data are in MNI space, we calculate mean FA over the [IITmean_FA_skeleton.nii.gz](https://www.nitrc.org/frs/download.php/6898/IITmean_FA_skeleton.nii.gz)
* once the data are in MNI space, we calculate mean FA over the [IITmean_FA_skeleton.nii.gz](https://www.nitrc.org/frs/download.php/6897/IITmean_FA_skeleton.nii.gz)

NOTE: Download the above data and place them in `IITAtlas/` directory.

Expand All @@ -479,7 +479,7 @@ The numbers should like like below:
BSNIP mean FA before harmonization: 0.5072286796848892
BSNIP mean FA after harmonization: 0.5321998242139347

As we see above, BSNIP (target) mean FA over [IITmean_FA_skeleton.nii.gz](http://www.iit.edu/~mri/IITHumanBrainAtlas.html)
As we see above, BSNIP (target) mean FA over [IITmean_FA_skeleton.nii.gz](https://www.nitrc.org/frs/download.php/6897/IITmean_FA_skeleton.nii.gz)
for all the site images after harmonization increased to be almost equal to that of CIDAR (reference) mean FA.

Now there are two ways to debug:
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