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joethorley committed May 25, 2023
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101 changes: 20 additions & 81 deletions .github/workflows/R-CMD-check.yaml
Original file line number Diff line number Diff line change
@@ -1,22 +1,15 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches:
- main
- master
- dev
branches: [main, master]
pull_request:
branches:
- main
- master
- dev
schedule:
- cron: '0 8 * * 0'
branches: [main, master]

name: R-CMD-check

jobs:
R-CMD-check:
if: "!contains(github.event.head_commit.message, 'skip ci')"
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})
Expand All @@ -25,86 +18,32 @@ jobs:
fail-fast: false
matrix:
config:
- {os: macOS-latest, r: 'release'}
- {os: macos-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-latest, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-latest, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}

env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.config.r }}

- uses: r-lib/actions/setup-pandoc@master
- uses: r-lib/actions/setup-pandoc@v2

- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}

- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v2
- uses: r-lib/actions/setup-r@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

- name: Install system dependencies
if: runner.os == 'Linux'
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
shell: Rscript {0}

- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}

- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}

- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
- uses: r-lib/actions/setup-r-dependencies@v2
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
extra-packages: any::rcmdcheck
needs: check

- name: action-slack
if: failure()
env:
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }}
uses: 8398a7/action-slack@v3.0.0
- uses: r-lib/actions/check-r-package@v2
with:
status: ${{ job.status }}
author_name: "github action: ${{github.workflow}}"
fields: repo, ref, commit, author, message
upload-snapshots: true
46 changes: 0 additions & 46 deletions .github/workflows/coverage.yaml

This file was deleted.

66 changes: 30 additions & 36 deletions .github/workflows/pkgdown.yaml
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@@ -1,54 +1,48 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: master
branches: [main, master]
pull_request:
branches: [main, master]
release:
types: [published]
workflow_dispatch:

name: pkgdown

jobs:
pkgdown:
runs-on: macOS-latest
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-r@master
- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-pandoc@master

- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- name: Cache R packages
uses: actions/cache@v1
- uses: r-lib/actions/setup-r-dependencies@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
extra-packages: any::pkgdown, local::.
needs: website

- name: Install dependencies
run: |
install.packages("remotes")
remotes::install_deps(dependencies = TRUE)
remotes::install_dev("pkgdown")
- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Install package
run: R CMD INSTALL .

- name: Deploy package
run: pkgdown::deploy_to_branch(new_process = FALSE)
shell: Rscript {0}
- name: action-slack
if: failure()
env:
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }}
uses: 8398a7/action-slack@v3.0.0
- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/github-pages-deploy-action@v4.4.1
with:
status: ${{ job.status }}
author_name: "github action: pkgdown"
fields: repo, workflow, commit, message, author, action
clean: false
branch: gh-pages
folder: docs
51 changes: 0 additions & 51 deletions .github/workflows/pr-commands.yaml

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50 changes: 50 additions & 0 deletions .github/workflows/test-coverage.yaml
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@@ -0,0 +1,50 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]

name: test-coverage

jobs:
test-coverage:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr
needs: coverage

- name: Test coverage
run: |
covr::codecov(
quiet = FALSE,
clean = FALSE,
install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
)
shell: Rscript {0}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v3
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
3 changes: 2 additions & 1 deletion README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -14,10 +14,11 @@ knitr::opts_chunk$set(

<!-- badges: start -->
[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
[![R-CMD-check](https://github.com/poissonconsulting/tmbr/workflows/R-CMD-check/badge.svg)](https://github.com/poissonconsulting/tmbr/actions)
[![R-CMD-check](https://github.com/poissonconsulting/tmbr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/poissonconsulting/tmbr/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/poissonconsulting/tmbr/branch/master/graph/badge.svg)](https://codecov.io/gh/poissonconsulting/tmbr?branch=master)
[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1162374.svg)](https://doi.org/10.5281/zenodo.1162374)

<!-- badges: end -->

# tmbr
Expand Down
3 changes: 2 additions & 1 deletion README.md
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Expand Up @@ -4,12 +4,13 @@

[![Lifecycle:
stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
[![R-CMD-check](https://github.com/poissonconsulting/tmbr/workflows/R-CMD-check/badge.svg)](https://github.com/poissonconsulting/tmbr/actions)
[![R-CMD-check](https://github.com/poissonconsulting/tmbr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/poissonconsulting/tmbr/actions/workflows/R-CMD-check.yaml)
[![Codecov test
coverage](https://codecov.io/gh/poissonconsulting/tmbr/branch/master/graph/badge.svg)](https://codecov.io/gh/poissonconsulting/tmbr?branch=master)
[![License:
MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1162374.svg)](https://doi.org/10.5281/zenodo.1162374)

<!-- badges: end -->

# tmbr
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