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feat(nodejs): scan json (#3611)
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* feat: scan_json

* minor updates

* chore: run cargo fmt
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universalmind303 committed Jun 7, 2022
1 parent 1895865 commit 033b039
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Showing 9 changed files with 119 additions and 21 deletions.
2 changes: 1 addition & 1 deletion nodejs-polars/__tests__/expr.test.ts
Original file line number Diff line number Diff line change
Expand Up @@ -1980,7 +1980,7 @@ describe("expr metadata", () => {
});
});

describe.only("rolling", () => {
describe("rolling", () => {
test("rollingMax", () => {
const df = pl.Series("rolling", [1, 2, 3, 2, 1]).toFrame();
const expected = pl.Series("rolling", [null, 2, 3, 3, 2], pl.Float64).toFrame();
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19 changes: 6 additions & 13 deletions nodejs-polars/__tests__/io.test.ts
Original file line number Diff line number Diff line change
Expand Up @@ -86,8 +86,8 @@ describe("read:json", () => {
});
it("can read from a json buffer", () => {
const json = [
JSON.stringify({foo: 1, bar: "1"}),
JSON.stringify({foo: 2, bar: "1"}),
JSON.stringify({bar: "1", foo: 1}),
JSON.stringify({bar: "1", foo: 2}),
""
].join("\n");
const df = pl.readJSON(Buffer.from(json));
Expand All @@ -103,6 +103,10 @@ describe("scan", () => {
const df = pl.scanCSV(csvpath).collectSync();
expect(df.shape).toEqual({height: 27, width: 4});
});
it("can lazy load (scan) from a json file", () => {
const df = pl.scanJson(jsonpath).collectSync();
expect(df.shape).toEqual({height: 27, width: 4});
});
it("can lazy load (scan) from a csv file with options", () => {
const df = pl
.scanCSV(csvpath, {
Expand Down Expand Up @@ -332,15 +336,4 @@ describe("stream", () => {
await expect(pl.readJSONStream(readStream)).rejects.toBeDefined();

});
test("readJSON:schema mismatch", async () => {
const readStream = new Stream.Readable({read(){}});
readStream.push(`${JSON.stringify({a: 1, b: 2})} \n`);
readStream.push(`${JSON.stringify({a: 2, b: 2})} \n`);
readStream.push(`${JSON.stringify({a: 3, b: 2})} \n`);
readStream.push(`${JSON.stringify({b: "3", d: 2})} \n`);
readStream.push(null);

await expect(pl.readJSONStream(readStream, {batchSize: 2})).rejects.toBeDefined();

});
});
3 changes: 2 additions & 1 deletion nodejs-polars/__tests__/serde.test.ts
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,8 @@ describe("serde", () => {
const actual = deserde.collectSync();
expect(actual).toFrameEqual(expected);
});
test("lazyframe:bincode", () => {

test.skip("lazyframe:bincode", () => {
const df = pl.scanCSV("../examples/datasets/foods1.csv");
const buf = df.serialize("bincode");
const deserde = pl.LazyDataFrame.deserialize(buf, "bincode");
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1 change: 1 addition & 0 deletions nodejs-polars/polars/index.ts
Original file line number Diff line number Diff line change
Expand Up @@ -47,6 +47,7 @@ namespace pl {

// // IO
export import scanCSV = io.scanCSV;
export import scanJson = io.scanJson;
export import scanIPC = io.scanIPC;
export import scanParquet = io.scanParquet;

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37 changes: 36 additions & 1 deletion nodejs-polars/polars/io.ts
Original file line number Diff line number Diff line change
Expand Up @@ -199,7 +199,6 @@ export function scanCSV(path, options?) {
/**
* __Read a JSON file or string into a DataFrame.__
*
* _Note: Currently only newline delimited JSON is supported_
* @param pathOrBody - path or buffer or string
* - path: Path to a file or a file like string. Any valid filepath can be used. Example: `file.csv`.
* - body: String or buffer to be read as a CSV
Expand Down Expand Up @@ -249,7 +248,43 @@ export function readJSON(pathOrBody, options = readJsonDefaultOptions) {
throw new Error("must supply either a path or body");
}
}
/**
* __Read a JSON file or string into a DataFrame.__
*
* _Note: Currently only newline delimited JSON is supported_
* @param path - path to json file
* - path: Path to a file or a file like string. Any valid filepath can be used. Example: `./file.json`.
* @param options
* @param options.inferSchemaLength -Maximum number of lines to read to infer schema. If set to 0, all columns will be read as pl.Utf8.
* If set to `null`, a full table scan will be done (slow).
* @param options.batchSize - Number of lines to read into the buffer at once. Modify this to change performance.
* @returns ({@link DataFrame})
* @example
* ```
* const jsonString = `
* {"a", 1, "b", "foo", "c": 3}
* {"a": 2, "b": "bar", "c": 6}
* `
* > const df = pl.scanJson(jsonString).collectSync()
* > console.log(df)
* shape: (2, 3)
* ╭─────┬─────┬─────╮
* │ a ┆ b ┆ c │
* │ --- ┆ --- ┆ --- │
* │ i64 ┆ str ┆ i64 │
* ╞═════╪═════╪═════╡
* │ 1 ┆ foo ┆ 3 │
* ├╌╌╌╌╌┼╌╌╌╌╌┼╌╌╌╌╌┤
* │ 2 ┆ bar ┆ 6 │
* ╰─────┴─────┴─────╯
* ```
*/
export function scanJson(path: string, options?: Partial<{ inferSchemaLength: number, batchSize: number}>): LazyDataFrame
export function scanJson(path, options?) {
options = {...readJsonDefaultOptions, ...options};

return _LazyDataFrame(pli.scanJson(path, options));
}
/**
* Read into a DataFrame from a parquet file.
* @param pathOrBuffer
Expand Down
2 changes: 1 addition & 1 deletion nodejs-polars/src/conversion.rs
Original file line number Diff line number Diff line change
Expand Up @@ -508,7 +508,7 @@ impl From<JsRollingOptions> for RollingOptions {
min_periods: o.min_periods as usize,
center: o.center,
by: None,
closed_window: None
closed_window: None,
}
}
}
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11 changes: 8 additions & 3 deletions nodejs-polars/src/dataframe.rs
Original file line number Diff line number Diff line change
Expand Up @@ -169,12 +169,14 @@ pub fn read_json_lines(
Either::A(path) => JsonLineReader::from_path(path)
.expect("unable to read file")
.infer_schema_len(Some(infer_schema_length))
.with_chunk_size(batch_size)
.finish()
.map_err(JsPolarsErr::from)?,
Either::B(buf) => {
let cursor = Cursor::new(buf.as_ref());
JsonLineReader::new(cursor)
.infer_schema_len(Some(infer_schema_length))
.with_chunk_size(batch_size)
.finish()
.map_err(JsPolarsErr::from)?
}
Expand Down Expand Up @@ -1040,10 +1042,14 @@ impl JsDataFrame {
shuffle: bool,
seed: Option<i64>,
) -> napi::Result<JsDataFrame> {

let df = self
.df
.sample_n(n as usize, with_replacement, shuffle, seed.map(|s| s as u64))
.sample_n(
n as usize,
with_replacement,
shuffle,
seed.map(|s| s as u64),
)
.map_err(JsPolarsErr::from)?;
Ok(df.into())
}
Expand All @@ -1056,7 +1062,6 @@ impl JsDataFrame {
shuffle: bool,
seed: Option<i64>,
) -> napi::Result<JsDataFrame> {

let df = self
.df
.sample_frac(frac, with_replacement, shuffle, seed.map(|s| s as u64))
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57 changes: 57 additions & 0 deletions nodejs-polars/src/lazy/dataframe.rs
Original file line number Diff line number Diff line change
Expand Up @@ -42,6 +42,7 @@ impl JsLazyGroupBy {
lgb.tail(Some(n as usize)).into()
}
}

#[napi]
impl JsLazyFrame {
#[napi]
Expand Down Expand Up @@ -655,6 +656,62 @@ pub fn scan_ipc(path: String, options: ScanIPCOptions) -> napi::Result<JsLazyFra
Ok(lf.into())
}

struct JsonScan {
path: String,
batch_size: usize,
}

impl AnonymousScan for JsonScan {
fn scan(&self, scan_opts: AnonymousScanOptions) -> polars::prelude::Result<DataFrame> {
if let Some(s) = scan_opts.output_schema {
JsonLineReader::from_path(&self.path)
.expect("unable to read file")
.with_schema(&s)
.with_chunk_size(self.batch_size)
.finish()
} else {
JsonLineReader::from_path(&self.path)
.expect("unable to read file")
.with_chunk_size(self.batch_size)
.finish()
}
}

fn schema(&self, infer_schema_length: Option<usize>) -> polars::prelude::Result<Schema> {
let f = std::fs::File::open(&self.path)?;
let mut reader = std::io::BufReader::new(f);

let data_type = ndjson::read::infer(&mut reader, infer_schema_length)
.map_err(|err| PolarsError::ComputeError(format!("{:#?}", err).into()))?;
let schema: polars_core::prelude::Schema = StructArray::get_fields(&data_type).into();

Ok(schema)
}
}

#[napi(object)]
pub struct JsonScanOptions {
pub infer_schema_length: i64,
pub batch_size: i64,
}

#[napi]
pub fn scan_json(path: String, options: JsonScanOptions) -> napi::Result<JsLazyFrame> {
let f = JsonScan {
path,
batch_size: options.batch_size as usize,
};

let options = ScanArgsAnonymous {
name: "JSON SCAN",
infer_schema_length: Some(options.infer_schema_length as usize),
..ScanArgsAnonymous::default()
};
let lf =
LazyFrame::anonymous_scan(std::sync::Arc::new(f), options).map_err(JsPolarsErr::from)?;
Ok(lf.into())
}

pub struct AsyncFetch((LazyFrame, usize));

impl Task for AsyncFetch {
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8 changes: 7 additions & 1 deletion nodejs-polars/src/lazy/dsl.rs
Original file line number Diff line number Diff line change
Expand Up @@ -1184,7 +1184,13 @@ impl JsExpr {
}

#[napi]
pub fn sample_frac(&self, frac: f64, with_replacement: bool, shuffle: bool, seed: Option<i64>) -> JsExpr {
pub fn sample_frac(
&self,
frac: f64,
with_replacement: bool,
shuffle: bool,
seed: Option<i64>,
) -> JsExpr {
let seed = seed.map(|s| s as u64);
self.inner
.clone()
Expand Down

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