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make partitioned groupby work on nested lists
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ritchie46 committed Nov 19, 2021
1 parent 4718282 commit b875935
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Showing 5 changed files with 102 additions and 20 deletions.
3 changes: 2 additions & 1 deletion polars/polars-core/src/chunked_array/list/mod.rs
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,8 @@ pub mod namespace;
use crate::prelude::*;

impl ListChunked {
pub(crate) fn set_fast_explode(&mut self) {
#[cfg(feature = "private")]
pub fn set_fast_explode(&mut self) {
self.bit_settings |= 1 << 2;
}

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47 changes: 46 additions & 1 deletion polars/polars-core/src/frame/groupby/aggregations.rs
Original file line number Diff line number Diff line change
Expand Up @@ -553,7 +553,52 @@ impl AggList for Utf8Chunked {
}
}

impl AggList for ListChunked {}
impl AggList for ListChunked {
fn agg_list(&self, groups: &[(u32, Vec<u32>)]) -> Option<Series> {
let mut can_fast_explode = true;
let mut offsets = MutableBuffer::<i64>::with_capacity(groups.len() + 1);
let mut length_so_far = 0i64;
offsets.push(length_so_far);

let mut list_values = Vec::with_capacity(groups.len());
groups.iter().for_each(|(_, idx)| {
let idx_len = idx.len();
if idx_len == 0 {
can_fast_explode = false;
}

length_so_far += idx_len as i64;
// Safety:
// group tuples are in bounds
unsafe {
let mut s = self.take_unchecked((idx.iter().map(|idx| *idx as usize)).into());
let arr = s.chunks.pop().unwrap();
list_values.push(arr);

// Safety:
// we know that offsets has allocated enough slots
offsets.push_unchecked(length_so_far);
}
});
if groups.is_empty() {
list_values.push(self.chunks[0].slice(0, 0).into())
}
let arrays = list_values.iter().map(|arr| &**arr).collect::<Vec<_>>();
let list_values: ArrayRef = arrow::compute::concat::concatenate(&arrays).unwrap().into();
let data_type = ListArray::<i64>::default_datatype(list_values.data_type().clone());
let arr = Arc::new(ListArray::<i64>::from_data(
data_type,
offsets.into(),
list_values,
None,
)) as ArrayRef;
let mut listarr = ListChunked::new_from_chunks(self.name(), vec![arr]);
if can_fast_explode {
listarr.set_fast_explode()
}
Some(listarr.into_series())
}
}
impl AggList for CategoricalChunked {
fn agg_list(&self, groups: &[(u32, Vec<u32>)]) -> Option<Series> {
match self.deref().agg_list(groups) {
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50 changes: 36 additions & 14 deletions polars/polars-lazy/src/physical_plan/expressions/aggregation.rs
Original file line number Diff line number Diff line change
@@ -1,8 +1,7 @@
use crate::physical_plan::state::ExecutionState;
use crate::physical_plan::PhysicalAggregation;
use crate::prelude::*;
use polars_arrow::array::ValueSize;
use polars_core::chunked_array::builder::get_list_builder;
use polars_arrow::arrow::{array::*, buffer::MutableBuffer, compute::concat::concatenate};
use polars_core::frame::groupby::{fmt_groupby_column, GroupByMethod, GroupTuples};
use polars_core::utils::NoNull;
use polars_core::{prelude::*, POOL};
Expand Down Expand Up @@ -206,26 +205,49 @@ impl PhysicalAggregation for AggregationExpr {
Ok(rename_option_series(agg_s, &new_name))
}
GroupByMethod::List => {
// the groups are scattered over multiple groups/sub dataframes.
// we now must collect them into a single group
let series = self.expr.evaluate(final_df, state)?;
let ca = series.list().unwrap();
let new_name = fmt_groupby_column(ca.name(), self.agg_type);

let values_type = match ca.dtype() {
DataType::List(dt) => *dt.clone(),
_ => unreachable!(),
};
let mut values = Vec::with_capacity(groups.len());
let mut can_fast_explode = true;

let mut offsets = MutableBuffer::<i64>::with_capacity(groups.len() + 1);
let mut length_so_far = 0i64;
offsets.push(length_so_far);

let mut builder =
get_list_builder(&values_type, ca.get_values_size(), ca.len(), &new_name);
for (_, idx) in groups {
// Safety
// The indexes of the groupby operation are never out of bounds
let ca = unsafe { ca.take_unchecked(idx.iter().map(|i| *i as usize).into()) };
let ca = unsafe {
// Safety
// The indexes of the groupby operation are never out of bounds
ca.take_unchecked(idx.iter().map(|i| *i as usize).into())
};
let s = ca.explode()?;
builder.append_series(&s);
length_so_far += s.len() as i64;
offsets.push(length_so_far);
values.push(s.chunks()[0].clone());

if s.len() == 0 {
can_fast_explode = false;
}
}
let vals = values.iter().map(|arr| &**arr).collect::<Vec<_>>();
let values: ArrayRef = concatenate(&vals).unwrap().into();

let data_type = ListArray::<i64>::default_datatype(values.data_type().clone());
let arr = Arc::new(ListArray::<i64>::from_data(
data_type,
offsets.into(),
values,
None,
)) as ArrayRef;
let mut ca = ListChunked::new_from_chunks(&new_name, vec![arr]);
if can_fast_explode {
ca.set_fast_explode()
}
let out = builder.finish();
Ok(Some(out.into_series()))
Ok(Some(ca.into_series()))
}
_ => PhysicalAggregation::aggregate(self, final_df, groups, state),
}
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14 changes: 14 additions & 0 deletions polars/polars-lazy/src/test.rs
Original file line number Diff line number Diff line change
Expand Up @@ -2165,6 +2165,8 @@ fn test_take_consistency() -> Result<()> {
}

#[test]
#[cfg(feature = "ignore")]
// todo! activate (strange abort in CI)
fn test_groupby_on_lists() -> Result<()> {
let s0 = Series::new("", [1i32, 2, 3]);
let s1 = Series::new("groups", [4i32, 5]);
Expand All @@ -2187,5 +2189,17 @@ fn test_groupby_on_lists() -> Result<()> {
&DataType::List(Box::new(DataType::Int32))
);

let out = df
.clone()
.lazy()
.groupby([col("groups")])
.agg([col("arrays").list()])
.collect()?;

assert_eq!(
out.column("arrays_agg_list")?.dtype(),
&DataType::List(Box::new(DataType::List(Box::new(DataType::Int32))))
);

Ok(())
}
8 changes: 4 additions & 4 deletions py-polars/polars/eager/series.py
Original file line number Diff line number Diff line change
Expand Up @@ -3268,12 +3268,12 @@ def concat(self, other: Union[tp.List[Series], Series]) -> "Series":
"""
if not isinstance(other, list):
other = [other]
sthis = wrap_s(self._s)
s = wrap_s(self._s)
names = [s.name for s in other]
names.insert(0, sthis.name)
names.insert(0, s.name)
df = pl.DataFrame(other)
df.insert_at_idx(0, sthis)
return df.select(pl.concat_list(names))[sthis.name] # type: ignore
df.insert_at_idx(0, s)
return df.select(pl.concat_list(names))[s.name] # type: ignore


class DateTimeNameSpace:
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