added readme, renamed code to src

poldrack · Feb 14, 2012 · 238bbbc · 238bbbc
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diff --git a/README b/README
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+This repository contains code and relevant files for the Latent Structure
+modeling project described in Poldrack et al. (submitted).
diff --git a/code/1.1_merge_peakfiles.sh → src/1.1_merge_peakfiles.sh b/code/1.1_merge_peakfiles.sh → src/1.1_merge_peakfiles.sh
diff --git a/code/1.2_extract_nidag_text.py → src/1.2_extract_nidag_text.py b/code/1.2_extract_nidag_text.py → src/1.2_extract_nidag_text.py
diff --git a/code/10_mk_8fold_cogatlas_mallet_data.py → src/10_mk_8fold_cogatlas_mallet_data.py b/code/10_mk_8fold_cogatlas_mallet_data.py → src/10_mk_8fold_cogatlas_mallet_data.py
diff --git a/code/11_mk_8fold_disorders_mallet_data.py → src/11_mk_8fold_disorders_mallet_data.py b/code/11_mk_8fold_disorders_mallet_data.py → src/11_mk_8fold_disorders_mallet_data.py
diff --git a/code/12_mk_8fold_cogatlas_topic_models.py → src/12_mk_8fold_cogatlas_topic_models.py b/code/12_mk_8fold_cogatlas_topic_models.py → src/12_mk_8fold_cogatlas_topic_models.py
diff --git a/code/13.1_run_all_nfold_scripts.sh → src/13.1_run_all_nfold_scripts.sh b/code/13.1_run_all_nfold_scripts.sh → src/13.1_run_all_nfold_scripts.sh
diff --git a/code/13.2_run_all_disorder_nfold_scripts.sh → src/13.2_run_all_disorder_nfold_scripts.sh b/code/13.2_run_all_disorder_nfold_scripts.sh → src/13.2_run_all_disorder_nfold_scripts.sh
diff --git a/code/13_mk_8fold_disorders_topic_models.py → src/13_mk_8fold_disorders_topic_models.py b/code/13_mk_8fold_disorders_topic_models.py → src/13_mk_8fold_disorders_topic_models.py
diff --git a/code/14_get_best_topic_likelihood.py → src/14_get_best_topic_likelihood.py b/code/14_get_best_topic_likelihood.py → src/14_get_best_topic_likelihood.py
diff --git a/code/15.1_get_disorders_dimensionality.py → src/15.1_get_disorders_dimensionality.py b/code/15.1_get_disorders_dimensionality.py → src/15.1_get_disorders_dimensionality.py
diff --git a/code/15.2_run_all_disorders_models.sh → src/15.2_run_all_disorders_models.sh b/code/15.2_run_all_disorders_models.sh → src/15.2_run_all_disorders_models.sh
diff --git a/.../15.3_get_best_disorder_dimensionality.py → src/15.3_get_best_disorder_dimensionality.py b/.../15.3_get_best_disorder_dimensionality.py → src/15.3_get_best_disorder_dimensionality.py
diff --git a/code/15_run_topic_models.py → src/15_run_topic_models.py b/code/15_run_topic_models.py → src/15_run_topic_models.py
diff --git a/code/16_mk_cogatlas_loadingdata.py → src/16_mk_cogatlas_loadingdata.py b/code/16_mk_cogatlas_loadingdata.py → src/16_mk_cogatlas_loadingdata.py
diff --git a/code/17_mk_disorders_loadingdata.py → src/17_mk_disorders_loadingdata.py b/code/17_mk_disorders_loadingdata.py → src/17_mk_disorders_loadingdata.py
diff --git a/code/18.1.1_mk_disorder29_maps.sh → src/18.1.1_mk_disorder29_maps.sh b/code/18.1.1_mk_disorder29_maps.sh → src/18.1.1_mk_disorder29_maps.sh
diff --git a/code/18.1.1_run_all_disorder_chisq.sh → src/18.1.1_run_all_disorder_chisq.sh b/code/18.1.1_run_all_disorder_chisq.sh → src/18.1.1_run_all_disorder_chisq.sh
diff --git a/code/18.1_mk_all_chisq_maps.sh → src/18.1_mk_all_chisq_maps.sh b/code/18.1_mk_all_chisq_maps.sh → src/18.1_mk_all_chisq_maps.sh
diff --git a/code/18.2_mk_6mm_chisq_maps.sh → src/18.2_mk_6mm_chisq_maps.sh b/code/18.2_mk_6mm_chisq_maps.sh → src/18.2_mk_6mm_chisq_maps.sh
diff --git a/code/18_mk_all_chisq_maps.py → src/18_mk_all_chisq_maps.py b/code/18_mk_all_chisq_maps.py → src/18_mk_all_chisq_maps.py
diff --git a/code/19_mk_slice_images_cogatlas.py → src/19_mk_slice_images_cogatlas.py b/code/19_mk_slice_images_cogatlas.py → src/19_mk_slice_images_cogatlas.py
diff --git a/code/1_db_foci_to_image.py → src/1_db_foci_to_image.py b/code/1_db_foci_to_image.py → src/1_db_foci_to_image.py
diff --git a/code/20_mk_slice_images_disorders.py → src/20_mk_slice_images_disorders.py b/code/20_mk_slice_images_disorders.py → src/20_mk_slice_images_disorders.py
diff --git a/code/22_mk_latexreport_cogatlas.py → src/22_mk_latexreport_cogatlas.py b/code/22_mk_latexreport_cogatlas.py → src/22_mk_latexreport_cogatlas.py
diff --git a/code/23_mk_latexreport_disorders.py → src/23_mk_latexreport_disorders.py b/code/23_mk_latexreport_disorders.py → src/23_mk_latexreport_disorders.py
diff --git a/code/24_run_CCA_nonneg.py → src/24_run_CCA_nonneg.py b/code/24_run_CCA_nonneg.py → src/24_run_CCA_nonneg.py
diff --git a/code/2_get_cogat_concepts.py → src/2_get_cogat_concepts.py b/code/2_get_cogat_concepts.py → src/2_get_cogat_concepts.py
diff --git a/code/3_create_disorder_list.py → src/3_create_disorder_list.py b/code/3_create_disorder_list.py → src/3_create_disorder_list.py
diff --git a/code/4_get_disorders_NIF.py → src/4_get_disorders_NIF.py b/code/4_get_disorders_NIF.py → src/4_get_disorders_NIF.py
diff --git a/code/5_mk_cogatlas_docs.py → src/5_mk_cogatlas_docs.py b/code/5_mk_cogatlas_docs.py → src/5_mk_cogatlas_docs.py
diff --git a/code/6_mk_disorders_docs.py → src/6_mk_disorders_docs.py b/code/6_mk_disorders_docs.py → src/6_mk_disorders_docs.py
diff --git a/code/7_mk_pickled_data.py → src/7_mk_pickled_data.py b/code/7_mk_pickled_data.py → src/7_mk_pickled_data.py
diff --git a/code/8.1_mk_cogatlas_8fold_data.sh → src/8.1_mk_cogatlas_8fold_data.sh b/code/8.1_mk_cogatlas_8fold_data.sh → src/8.1_mk_cogatlas_8fold_data.sh
diff --git a/code/8_mk_8fold_cogatlas.py → src/8_mk_8fold_cogatlas.py b/code/8_mk_8fold_cogatlas.py → src/8_mk_8fold_cogatlas.py
diff --git a/code/9.1_mk_8fold_disorders_data.sh → src/9.1_mk_8fold_disorders_data.sh b/code/9.1_mk_8fold_disorders_data.sh → src/9.1_mk_8fold_disorders_data.sh
diff --git a/code/9_mk_8fold_disorders.py → src/9_mk_8fold_disorders.py b/code/9_mk_8fold_disorders.py → src/9_mk_8fold_disorders.py
diff --git a/code/run_mallet_cogatlas_130.sh → src/run_mallet_cogatlas_130.sh b/code/run_mallet_cogatlas_130.sh → src/run_mallet_cogatlas_130.sh
diff --git a/code/run_mallet_stub.sh → src/run_mallet_stub.sh b/code/run_mallet_stub.sh → src/run_mallet_stub.sh