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Write a script to store the Chado allele systematic IDs in Canto #2770

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kimrutherford opened this issue Sep 1, 2023 · 1 comment
Open

Write a script to store the Chado allele systematic IDs in Canto #2770

kimrutherford opened this issue Sep 1, 2023 · 1 comment
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needs testing

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@kimrutherford
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Once alleles have stable IDs, we'll need to load them into Canto and store them with the alleles.
@kimrutherford kimrutherford self-assigned this Sep 1, 2023
@kimrutherford kimrutherford mentioned this issue Sep 5, 2023
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kimrutherford added a commit that referenced this issue Sep 24, 2023
@kimrutherford
Add AlleleLookup::lookup_by_details()
7acbd06 
Refs #2770
kimrutherford added a commit that referenced this issue Feb 21, 2024
@kimrutherford
Add script to set external_uniquename by details
50e6a04 
Refs #2770
@kimrutherford
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This script is done. I've tested it locally but it needs a full load with all the new allele code to confirm.

After the systematic IDs are implemented, we'll running this script nightly to update new alleles in Canto sessions that match a Chado allele.

kimrutherford added a commit that referenced this issue Mar 15, 2024
@kimrutherford
Add script to set external_uniquename by details
4ecbd36 
Refs #2770
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Allele stable identifiers
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@kimrutherford