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Changes added to the edit file this PR

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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal distribution of interpolar microtubule rescue during anaphase B http://purl.obolibrary.org/obo/FYPO_0007975

Removed

• abnormal distribution of interpolar microtubule rescue during anaphase B definition "A cellular process phenotype observed during anaphase B in which the distribution of the positions of interpolar microtubule rescues is abnormal.
  The positions of interpolar microtubule rescues are where the transitions from shrinkage to growth occur."^^string

  • comment "PMID:35293864"^^string

  • comment "PomBase:mlr"

Added

• abnormal distribution of interpolar microtubule rescue during anaphase B definition "A cellular process phenotype observed during anaphase B in which the distribution of the positions of interpolar microtubule rescues is abnormal.
  The positions of interpolar microtubule rescues are where the transitions from shrinkage to growth occur."

  • comment "PMID:35293864"

  • comment "PomBase:mlr"

cut with mitotic spindle microtubules protruding beyond spindle pole body http://purl.obolibrary.org/obo/FYPO_0007968

Removed

• cut with mitotic spindle microtubules protruding beyond spindle pole body definition "An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell."^^string

  • comment "PMID:26031557"^^string

  • comment "PomBase:vw"^^string

  • comment "PomBase:mlr"

Added

• cut with mitotic spindle microtubules protruding beyond spindle pole body definition "An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell."

  • comment "PMID:26031557"

  • comment "PomBase:vw"

  • comment "PomBase:mlr"

decreased rate of interpolar microtubule polymerization during mitotic anaphase B http://purl.obolibrary.org/obo/FYPO_0007972

Removed

• decreased rate of interpolar microtubule polymerization during mitotic anaphase B definition "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal."^^string

  • comment "PMID:35293864"^^string

  • comment "PomBase:mlr"

Added

• decreased rate of interpolar microtubule polymerization during mitotic anaphase B definition "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal."

  • comment "PMID:35293864"

  • comment "PomBase:mlr"

increased duration of interpolar microtubule growth events during anaphase B http://purl.obolibrary.org/obo/FYPO_0007976

Removed

• increased duration of interpolar microtubule growth events during anaphase B definition "A microtubule cytoskeleton organization phenotype observed during anaphase B in which the duration of interpolar microtubule growth events is longer."^^string

  • comment "PMID:35293864"^^string

  • comment "PomBase:mlr"

Added

• increased duration of interpolar microtubule growth events during anaphase B definition "A microtubule cytoskeleton organization phenotype observed during anaphase B in which the duration of interpolar microtubule growth events is longer."

  • comment "PMID:35293864"

  • comment "PomBase:mlr"

increased interphase nuclear movement velocity in daughter cell without mitochondria http://purl.obolibrary.org/obo/FYPO_0009005

Removed

• increased interphase nuclear movement velocity in daughter cell without mitochondria definition "A cellular process phenotype observed in mitotic interphase in which microtubule-based movement oscillationsoccur at a faster speed than normal in a daughter cell that inherits no mitochondria."

  • database_cross_reference "PMID:36633091"^^string

  • database_cross_reference "PomBase:mlr"^^string

Added

• increased interphase nuclear movement velocity in daughter cell without mitochondria definition "A cellular process phenotype observed in mitotic interphase in which microtubule-based movement oscillations occur at a faster speed than normal in a daughter cell that inherits no mitochondria."

  • database_cross_reference "PMID:36633091"

  • database_cross_reference "PomBase:mlr"

increased rate of interpolar microtubule polymerization during mitotic anaphase B http://purl.obolibrary.org/obo/FYPO_0007971

Removed

• increased rate of interpolar microtubule polymerization during mitotic anaphase B definition "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal."^^string

  • comment "PMID:35293864"^^string

  • comment "PomBase:mlr"

Added

• increased rate of interpolar microtubule polymerization during mitotic anaphase B definition "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal."

  • comment "PMID:35293864"

  • comment "PomBase:mlr"

increased rate of interpolar microtubule polymerization inside the mitotic nuclear membrane bridge http://purl.obolibrary.org/obo/FYPO_0007974

Removed

• increased rate of interpolar microtubule polymerization inside the mitotic nuclear membrane bridge definition "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization occurs at a higher rate, or speed, than normal for microtubules with their plus ends inside the nuclear membrane bridge formed during mitotic anaphase B."^^string

  • comment "PMID:35293864"^^string

  • comment "PomBase:mlr"

Added

• increased rate of interpolar microtubule polymerization inside the mitotic nuclear membrane bridge definition "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization occurs at a higher rate, or speed, than normal for microtubules with their plus ends inside the nuclear membrane bridge formed during mitotic anaphase B."

  • comment "PMID:35293864"

  • comment "PomBase:mlr"

increased rate of microtuble polymerization during vegetative growth http://purl.obolibrary.org/obo/FYPO_0007970

Removed

• increased rate of microtuble polymerization during vegetative growth definition "A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal."^^string

  • comment "PMID:35293864"^^string

  • comment "PomBase:mlr"

Added

• increased rate of microtuble polymerization during vegetative growth definition "A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal."

  • comment "PMID:35293864"

  • comment "PomBase:mlr"

increased sensitivity to chemical in stationary phase http://purl.obolibrary.org/obo/FYPO_0008000

Removed

• increased sensitivity to chemical in stationary phase definition "A phenotype in which cells show increased sensitivity to a chemical when the cell population is in stationary phase. Cells stop growing (and may die) at a concentration of that chemical that allows wild type cells to grow."^^string

  • comment "PMID:35618649"^^string

  • comment "PomBase:mlr"

Added

• increased sensitivity to chemical in stationary phase definition "A phenotype in which cells show increased sensitivity to a chemical when the cell population is in stationary phase. Cells stop growing (and may die) at a concentration of that chemical that allows wild type cells to grow."

  • comment "PMID:35618649"

  • comment "PomBase:mlr"

Changes to ontology after reasoner runs

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Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf