Also mention pgdspider.

pomo-dev · Mar 7, 2018 · 9f88f1f · 9f88f1f
1 parent 73f8868
commit 9f88f1f
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/scripts/FastaVCFToCounts.py b/scripts/FastaVCFToCounts.py
@@ -53,6 +53,9 @@
 includes all the individuals (e.g., with vcftools) and then use the `-merge`
 option of this script.
 
+You may prefer to convert your VCF that contained all taxa to a Fasta file with
+PGDSpider, and then use this in FastaToCounts.py.
+
 """
 
 parser = argparse.ArgumentParser(