Plotting information

[horaciobam]

• Calculate the total number of nucleotides involved in an overlap per each genome
• Calculate average overlap length using number of genes as denominator
• Instead of families as pie charts, plot them as stacked bar plots. Group them by Baltimore classification.
• Plot the number of overlaps as ridgeplot (using ggrich from ggfree)
• For the visualization of overlap length, compare genomes between families using earth mover's distance.

[horaciobam]

Error when trying to install devtools::install_github("ArtPoon/ggfree")

Installation failed: unable to load shared object '/usr/local/lib/R/site-library/curl/libs/curl.so':
  /usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)

[ArtPoon]

I think this is a devtools issue - there's a conflict between curl versions 3 and 4 that affects other programs. Based on the error message it looks like you have libcurl version 4 installed on your system, and unfortunately it can't coexist with version 3.