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@PoonLab

PoonLab

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  1. covizu covizu Public

    Rapid analysis and visualization of coronavirus genome variation

    JavaScript 46 20

  2. sierra-local sierra-local Public

    Retrieve HIVdb algorithm as XML and apply locally to HIV sequences

    Python 6 3

  3. bayroot bayroot Public

    Bayesian root-to-tip regression for dating reservoir sequences

    R 5 3

  4. HexSE HexSE Public

    Simulation of molecular evolution with overlapping reading frames

    Python 4 2

  5. clustuneR clustuneR Public

    Implementing clustering algorithms on genetic data and finding optimal parameters through the performance of predictive growth models.

    R

  6. fluclades fluclades Public

    Genetic taxonomy of influenza A virus subtypes

    Python 2

Repositories

Showing 10 of 36 repositories
  • Bioplus Public

    In-house scripts that extend the functionality of Biopython

    PoonLab/Bioplus’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 7, 2024
  • covizu Public

    Rapid analysis and visualization of coronavirus genome variation

    PoonLab/covizu’s past year of commit activity
    JavaScript 46 MIT 20 6 0 Updated Nov 5, 2024
  • twt Public

    Generic framework for the coalescent simulation of pathogen trees within host trees in R

    PoonLab/twt’s past year of commit activity
    R 3 AGPL-3.0 2 23 0 Updated Nov 4, 2024
  • tragula Public

    Mapping networks of shared research expertise by word embedding analysis

    PoonLab/tragula’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Oct 7, 2024
  • gromstole Public

    Quantifying SARS-CoV-2 VoCs from NGS data of wastewater samples

    PoonLab/gromstole’s past year of commit activity
    Python 3 MIT 5 6 (1 issue needs help) 0 Updated Jul 18, 2024
  • sierra-local Public

    Retrieve HIVdb algorithm as XML and apply locally to HIV sequences

    PoonLab/sierra-local’s past year of commit activity
    Python 6 GPL-3.0 3 4 (1 issue needs help) 0 Updated May 6, 2024
  • PoonLab/constellations’s past year of commit activity
    Python 0 17 2 0 Updated May 1, 2024
  • fluclades Public

    Genetic taxonomy of influenza A virus subtypes

    PoonLab/fluclades’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Apr 22, 2024
  • dynsbmR Public Forked from cran/dynsbm

    Fork of read-only mirror of the CRAN R package repository. dynsbm — Dynamic Stochastic Block Models. Homepage: http://lbbe.univ-lyon1.fr/dynsbm

    PoonLab/dynsbmR’s past year of commit activity
    C++ 0 GPL-3.0 4 1 0 Updated Mar 6, 2024
  • clustuneR Public

    Implementing clustering algorithms on genetic data and finding optimal parameters through the performance of predictive growth models.

    PoonLab/clustuneR’s past year of commit activity
    R 0 GPL-3.0 0 4 0 Updated Dec 31, 2023

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