Skip to content

Commit

Permalink
file naming woes from AWS
Browse files Browse the repository at this point in the history
  • Loading branch information
andrewkern committed Oct 19, 2021
1 parent 2139bfc commit da3e351
Show file tree
Hide file tree
Showing 2 changed files with 3 additions and 3 deletions.
2 changes: 1 addition & 1 deletion stdpopsim/catalog/HomSap/annotations.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@
"https://stdpopsim.s3-us-west-2.amazonaws.com/"
"annotations/HomSap/Ensembl_GRCh38_104_gff3.tar.gz"
),
intervals_sha256="1a2de33beaf2dada376654769db8370e649ff6f67dd0ec74287544eb52f850b2",
intervals_sha256="b0e864ec87274f3084e0d93161c8ed959b845c97a42cbad5bfe33f54c862716d",
citations=[
stdpopsim.Citation(
year=2018,
Expand Down
4 changes: 2 additions & 2 deletions tests/test_annotations.py
Original file line number Diff line number Diff line change
Expand Up @@ -144,7 +144,7 @@ def test_download_over_cache(self):
# TODO: The HomSap annotations are huge. Once we include a smaller
# annotation set, we should instead use that, so tests are faster.
species = stdpopsim.get_species("HomSap")
an = species.get_annotations("Ensembl_GRCh38_gff3")
an = species.get_annotations("Ensembl_GRCh38_104_gff3")
an.download()
assert an.is_cached()
an.download()
Expand All @@ -162,7 +162,7 @@ class TestGetChromosomeAnnotations(tests.CacheReadingTest):
@classmethod
def setup_class(cls):
species = stdpopsim.get_species("HomSap")
cls.an = species.get_annotations("Ensembl_GRCh38_gff3")
cls.an = species.get_annotations("Ensembl_GRCh38_104_gff3")

def test_known_chromosome(self):
cm = self.an.get_chromosome_annotations("21")
Expand Down

0 comments on commit da3e351

Please sign in to comment.