Add PanTro

[xin-huang]

In this pr, I added a demographic model for Pan troglodytes based on Kuhlwilm et al. 2019 Supplementary Table S2.2 column I and Table S3

Other parameters can be found in #1000

[codecov]

Codecov Report

Merging #1215 (0085a31) into main (e8e055e) will increase coverage by 0.00%.
The diff coverage is 100.00%.

❗ Current head 0085a31 differs from pull request most recent head 53b3812. Consider uploading reports for the commit 53b3812 to get more accurate results

@@           Coverage Diff           @@
##             main    #1215   +/-   ##
=======================================
  Coverage   99.56%   99.56%           
=======================================
  Files          98       99    +1     
  Lines        3182     3232   +50     
  Branches      414      415    +1     
=======================================
+ Hits         3168     3218   +50     
  Misses          6        6           
  Partials        8        8           

Impacted Files	Coverage Δ
stdpopsim/catalog/PanTro/__init__.py	100.00% <100.00%> (ø)
stdpopsim/catalog/PanTro/demographic_models.py	100.00% <100.00%> (ø)
stdpopsim/catalog/PanTro/genome_data.py	100.00% <100.00%> (ø)
stdpopsim/catalog/PanTro/species.py	100.00% <100.00%> (ø)
stdpopsim/catalog/BosTau/demographic_models.py	100.00% <0.00%> (ø)
stdpopsim/catalog/HelAnn/genome_data.py
stdpopsim/catalog/HelAnn/species.py
stdpopsim/catalog/HelAnn/__init__.py

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[grahamgower]

Hey @xin-huang. This looks great! The failing tests are just about code style, which can be fixed by using the pre-commit tool as described in the developer docs: https://popsim-consortium.github.io/stdpopsim-docs/latest/development.html#github-workflow

After that, I think this will be good to merge. It would be good to open an issue for the demographic model QC, separate to the species QC issue.

[xin-huang]

Hi @grahamgower
I fixed the code style. All tests are passed now.

[grahamgower]

Thanks @xin-huang. Could you please open a new issue to track the QC for the BonoboGhost_4K19 demographic model?