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added sunflower genome #1218

Merged
merged 2 commits into from
Apr 22, 2022
Merged

added sunflower genome #1218

merged 2 commits into from
Apr 22, 2022

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chriscrsmith
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Added basic data for the sunflower genome:

  • chromosome lengths
  • average recombination rate estimate
  • average mutation rate estimate
  • generation time
  • population size estimate

There are some other good resources available for sunflower, e.g. genetic maps and annotations, that could be added in. Although it's not super straightforward to find the actual data for these resources.

@chriscrsmith
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(sorry forgot pre-commit)

QC checklist: #1219

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codecov bot commented Apr 14, 2022

Codecov Report

Merging #1218 (5aa5cf5) into main (642e79d) will increase coverage by 0.00%.
The diff coverage is 100.00%.

@@           Coverage Diff           @@
##             main    #1218   +/-   ##
=======================================
  Coverage   99.55%   99.56%           
=======================================
  Files          95       98    +3     
  Lines        3171     3182   +11     
  Branches      414      414           
=======================================
+ Hits         3157     3168   +11     
  Misses          6        6           
  Partials        8        8           
Impacted Files Coverage Δ
stdpopsim/catalog/HelAnn/__init__.py 100.00% <100.00%> (ø)
stdpopsim/catalog/HelAnn/genome_data.py 100.00% <100.00%> (ø)
stdpopsim/catalog/HelAnn/species.py 100.00% <100.00%> (ø)

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@grahamgower grahamgower left a comment

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Thanks @chriscrsmith, this looks good to me!

@grahamgower grahamgower merged commit 6655f5e into popsim-consortium:main Apr 22, 2022
@chriscrsmith
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Thanks @grahamgower !

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2 participants