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Add per-chromosome mutation rates to C. reinhardtii and update refs #950

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merged 1 commit into from
May 31, 2021

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aays
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@aays aays commented May 29, 2021

Apologies for the significant delay in following up here (the Growing the Zoo hackathon was a fair bit ago now...) but I've finally been able to both obtain as well as upload the per-chromosome mutation rates for C. reinhardtii to figshare! I've also uploaded both the mutation and recombination rate data to figshare as recommended during the hackathon.

Technically covers a bit more of #828, though that issue was obviously closed after the merging of #863 back then.

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codecov bot commented May 29, 2021

Codecov Report

Merging #950 (97fb8af) into main (20a0cee) will decrease coverage by 0.00%.
The diff coverage is n/a.

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@@            Coverage Diff             @@
##             main     #950      +/-   ##
==========================================
- Coverage   99.30%   99.30%   -0.01%     
==========================================
  Files          84       84              
  Lines        2729     2728       -1     
  Branches      324      324              
==========================================
- Hits         2710     2709       -1     
  Misses          9        9              
  Partials       10       10              
Impacted Files Coverage Δ
stdpopsim/catalog/ChlRei/species.py 100.00% <ø> (ø)

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LGTM! Thanks @aays!

@grahamgower grahamgower merged commit 20e7de2 into popsim-consortium:main May 31, 2021
@aays aays deleted the update-chlrei branch June 1, 2021 20:34
@aays aays mentioned this pull request Oct 27, 2021
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@izabelcavassim izabelcavassim mentioned this pull request Oct 27, 2021
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2 participants