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AIP config is sourced too soon #489

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MattWellie opened this issue Oct 23, 2023 · 1 comment · Fixed by #490
Closed

AIP config is sourced too soon #489

MattWellie opened this issue Oct 23, 2023 · 1 comment · Fixed by #490
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@MattWellie
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https://batch.hail.populationgenomics.org.au/batches/429173/jobs/1

Upon importing the Stages from the relevant cpg_workflows.stages files, the AIP config is set

This occurs prior to the setting of config paths (including the workflow default)

Outcome: the fixed config doesn't contain any of the fields required from the default config
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Get AIP running on multiple datasets populationgenomics/production-pipelines
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