Skip to content

Pull requests: populationgenomics/production-pipelines

New pull request New
35 Open 631 Closed
35 Open 631 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Use Talos endpoints
#803 opened Jun 25, 2024 by MattWellie Loading…
Simplify Alignment Job and Resolve SAM Flag Issue in CRAM to FASTQ Conversion
#802 opened Jun 25, 2024 by michael-harper • Draft
TASK: Robust Metamist Integrations
#784 opened Jun 5, 2024 by milo-hyben • Draft
4 of 6 tasks
3
Extract 'Alignment' and 'Genotype' to be separate independent pipelines
#783 opened Jun 5, 2024 by michael-harper Loading…
Add test coverage
#779 opened Jun 3, 2024 by milo-hyben Loading…
1
Trim analysis callables
#777 opened May 30, 2024 by MattWellie Loading…
1
Simplify call to complete_analysis_job
#772 opened May 28, 2024 by illusional Loading…
Refactoring main for local dev
#771 opened May 28, 2024 by milo-hyben • Draft
2
Enable pre-commit mypy checks to typecheck cpg_utils usage
#728 opened May 6, 2024 by jmarshall Loading…
2
Cleans up list workflows
#698 opened Apr 18, 2024 by MattWellie Loading…
1
Environment Lock
#693 opened Apr 17, 2024 by nevoodoo Loading…
1 task done
4
Sites table generation
#692 opened Apr 16, 2024 by michael-harper • Draft
1
Change Docker build
#683 opened Apr 9, 2024 by MattWellie Loading…
3
Local Integration Test??
#671 opened Apr 4, 2024 by vivbak • Draft
Pca dataproc str
#667 opened Mar 27, 2024 by hopedisastro Loading…
Various tweaks relating to metamist
#640 opened Mar 11, 2024 by MattWellie Loading…
5
Parallel exports gcloud compose [prototype]
#639 opened Mar 11, 2024 by MattWellie • Draft
3
Fix intermediate file overwriting in test-tmp bucket to prevent script failures due to existing files
#631 opened Feb 28, 2024 by michael-harper Loading…
Remove 'v' Prefix from VDS Version in Large Cohort Pipeline for Better Output Version Handling
#604 opened Jan 23, 2024 by michael-harper Loading…
13
586 Multiallelic splitting
#602 opened Jan 19, 2024 by MattWellie Loading…
1
13
Test multiqc
#439 opened Aug 24, 2023 by michael-harper Loading…
34
Test happy
#438 opened Aug 23, 2023 by vivbak Loading…
12
Test plot ancestry
#422 opened Jul 28, 2023 by violetbrina Loading…
@violetbrina
Test infer ancestry
#421 opened Jul 28, 2023 by violetbrina Loading…
@violetbrina
2
Add genotype job tests
#419 opened Jul 26, 2023 by vivbak Loading…
3
ProTip! What’s not been updated in a month: updated:<2024-05-26.