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Do we provide convenience methods to run FSL, Freesurfer etc ? #335

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denisri opened this issue Nov 20, 2023 · 1 comment
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Do we provide convenience methods to run FSL, Freesurfer etc ? #335

denisri opened this issue Nov 20, 2023 · 1 comment
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3.0 enhancement question

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denisri commented Nov 20, 2023

In Capsul v2, we could use capsul.in_context.fsl, capsul.in_context.spm, capsul.in_context.freesurfer etc to easily run these external software using their configuration. These modules have been removed from Capsul v3. Do we plan to reimplement them in capsul, and how ?
Some code cannot be ported to capsul v3 at the moment because of these modules missing.
@denisri denisri mentioned this issue Nov 23, 2023
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denisri commented Nov 23, 2023

These features are used in processes so I'd say we need them...

@sapetnioc sapetnioc mentioned this issue Nov 24, 2023
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denisri added a commit that referenced this issue Nov 24, 2023
@denisri
reworked config modules activation in an execution context
928d1f3 
and ease use of external software by re-introducing in_context (#338, #335)
@denisri denisri closed this as completed Nov 24, 2023
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