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tree_comp

tree_comp

 
 

README

README

 
 

calculate_svd_scores.paup

calculate_svd_scores.paup

 
 

convert_phy_to_nexus.sh

convert_phy_to_nexus.sh

 
 

convert_protein_to_dna.sh

convert_protein_to_dna.sh

 
 

data_cleaning.sh

data_cleaning.sh

 
 

get_quartet_svd_scores.sh

get_quartet_svd_scores.sh

 
 

get_svd_scores_shashank.sh

get_svd_scores_shashank.sh

 
 

get_topology_trees.sh

get_topology_trees.sh

 
 

max-cut-tree

max-cut-tree

 
 

paup4a142_osx_leopard

paup4a142_osx_leopard

 
 

paup_to_qmc_wqmc.py

paup_to_qmc_wqmc.py

 
 

remove_leading_zeros.sh

remove_leading_zeros.sh

 
 

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Scripts for working with SVDQuartets (open source PAUP* version). 

The file convert_phy_to_nexus.sh requires the python library bioscripts. The file data_cleaning.sh converts a folder of phylip
data to nexus format and changes the alignment identifier from protein to dna.

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Scripts to run svdquartets in a pipeline.

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