a-continuous-time-stochastic-Boolean-model-of-the-budding-yeast-cell-cycle

'model.R'

• requires 'pars.R' (parameter values of the model).
• produces a variable named 'state' which is a dataframe containing a sequence of 14 recurring states shown in Fig. 1b and Table 2.

'simulate Fig1c-1f.R'

• requires 'pars.R' (parameter values of the model).
• produces Fig. 1c-1f in the manuscript.

'simulate Fig2.R'

• requires 'pars.R' (parameter values of the model).
• requires 'stat_exp.csv' (experimental data from Di Talia et. al's 2007 paper)
• produces Fig. 2 in the manuscript.