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Prime Medicine, Inc.

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  1. nf-core-crisprvar nf-core-crisprvar Public

    Forked from nf-core/crisprvar

    Run CRISPResso on genome editing experiments

    Nextflow

  2. CRISPResso2 CRISPResso2 Public

    Forked from pinellolab/CRISPResso2

    Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

    Python

  3. forgi forgi Public

    Forked from ViennaRNA/forgi

    An RNA manipulation library.

    Python

  4. SigProfilerPlotting SigProfilerPlotting Public

    Forked from AlexandrovLab/SigProfilerPlotting

    SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with oth…

    Python

  5. Azimuth Azimuth Public

    Forked from Biomatters/Azimuth

    Python 3 version of https://github.com/MicrosoftResearch/Azimuth for use by Prime Medicine (updated dependencies)

    Python

  6. sv-callers sv-callers Public

    Forked from GooglingTheCancerGenome/sv-callers

    Snakemake-based workflow for detecting structural variants in genomic data

    Python

Repositories

Showing 10 of 15 repositories
  • wf-aav-qc Public Forked from epi2me-labs/wf-aav-qc
    prime-medicine-inc/wf-aav-qc’s past year of commit activity
    Python 0 6 0 0 Updated Jun 17, 2024
  • PRIDICT Public Forked from uzh-dqbm-cmi/PRIDICT

    Prime editing guide RNA prediction

    prime-medicine-inc/PRIDICT’s past year of commit activity
    Python 0 MIT 6 0 0 Updated Mar 5, 2024
  • PRIDICT2 Public Forked from uzh-dqbm-cmi/PRIDICT2
    prime-medicine-inc/PRIDICT2’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Mar 5, 2024
  • Azimuth Public Forked from Biomatters/Azimuth

    Python 3 version of https://github.com/MicrosoftResearch/Azimuth for use by Prime Medicine (updated dependencies)

    prime-medicine-inc/Azimuth’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 0 Updated Jan 26, 2024
  • nf-nanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    prime-medicine-inc/nf-nanoseq’s past year of commit activity
    Nextflow 0 MIT 76 0 0 Updated Oct 30, 2023
  • SigProfilerExtractor Public Forked from AlexandrovLab/SigProfilerExtractor

    SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample.

    prime-medicine-inc/SigProfilerExtractor’s past year of commit activity
    Python 0 BSD-2-Clause 50 0 0 Updated Oct 20, 2023
  • sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    prime-medicine-inc/sarek’s past year of commit activity
    Nextflow 0 MIT 392 0 0 Updated Oct 16, 2023
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    prime-medicine-inc/configs’s past year of commit activity
    Nextflow 0 MIT 261 0 0 Updated Sep 21, 2023
  • DeepPrime Public Forked from hkimlab/DeepPrime

    Source codes and examples for DeepPrime

    prime-medicine-inc/DeepPrime’s past year of commit activity
    Python 0 2 0 0 Updated Aug 18, 2023
  • SigProfilerPlotting Public Forked from AlexandrovLab/SigProfilerPlotting

    SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

    prime-medicine-inc/SigProfilerPlotting’s past year of commit activity
    Python 0 BSD-2-Clause 13 0 0 Updated May 25, 2023
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