fix test code cov #86
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| schedule: | |
| - cron: 0 0 * * 1 # schedule to run at midnight on Monday each week | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: Fedora | |
| jobs: | |
| R-CMD-check: | |
| name: Fedora (devel) | |
| runs-on: ubuntu-latest | |
| container: | |
| image: docker://rhub/fedora-clang-devel:latest | |
| options: --user root | |
| env: | |
| _R_REMOTES_NO_ERRORS_FROM_WARNINGS_: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| _R_CHECK_TIMINGS_: 10 | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_LIMIT_CORES_: true | |
| _R_CHECK_LICENSE_: true | |
| OMP_THREAD_LIMIT: 2 | |
| KMP_DEVICE_THREAD_LIMIT: 2 | |
| KMP_TEAMS_THREAD_LIMIT: 2 | |
| KMP_ALL_THREADS: 2 | |
| NOT_CRAN: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CI: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup path | |
| run: | | |
| echo "/opt/R-devel/bin" >> $GITHUB_PATH | |
| - name: Install system dependencies | |
| run: | | |
| echo $PATH | |
| dnf install -y \ | |
| mpfr-devel \ | |
| automake \ | |
| fftw-devel \ | |
| gmp-devel \ | |
| openssl-devel \ | |
| zlib-devel \ | |
| pandoc \ | |
| geos-devel \ | |
| make \ | |
| gdal \ | |
| libxml2-devel \ | |
| cmake \ | |
| proj-devel \ | |
| sqlite-devel \ | |
| gdal-devel \ | |
| libicu-devel \ | |
| udunits2-devel \ | |
| coin-or-SYMPHONY-devel \ | |
| git-all | |
| - name: Install dependencies | |
| run: | | |
| options(repos = "https://cloud.r-project.org/") | |
| install.packages("remotes") | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Session information | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: | | |
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-build-vignettes"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash |