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Merge pull request #60 from JPHammonds/master
Add new plugin test for XPCS plugin
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| @@ -1,39 +1,39 @@ | ||
| *.py[cod] | ||
|
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| # output from this program | ||
| src/spec2nexus/data/*.hdf5 | ||
|
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| # C extensions | ||
| *.so | ||
|
|
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| # Packages | ||
| *.egg | ||
| *.egg-info | ||
| dist | ||
| build | ||
| eggs | ||
| parts | ||
| bin | ||
| var | ||
| sdist | ||
| develop-eggs | ||
| .installed.cfg | ||
| lib | ||
| lib64 | ||
| __pycache__ | ||
|
|
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| # Installer logs | ||
| pip-log.txt | ||
|
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| # Unit test / coverage reports | ||
| .coverage | ||
| .tox | ||
| nosetests.xml | ||
|
|
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| # Translations | ||
| *.mo | ||
|
|
||
| # Mr Developer | ||
| .mr.developer.cfg | ||
| /.settings | ||
| /src/spec2nexus/__plots__ | ||
| *.py[cod] | ||
|
|
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| # output from this program | ||
| src/spec2nexus/data/*.hdf5 | ||
|
|
||
| # C extensions | ||
| *.so | ||
|
|
||
| # Packages | ||
| *.egg | ||
| *.egg-info | ||
| dist | ||
| build | ||
| eggs | ||
| parts | ||
| bin | ||
| var | ||
| sdist | ||
| develop-eggs | ||
| .installed.cfg | ||
| lib | ||
| lib64 | ||
| __pycache__ | ||
|
|
||
| # Installer logs | ||
| pip-log.txt | ||
|
|
||
| # Unit test / coverage reports | ||
| .coverage | ||
| .tox | ||
| nosetests.xml | ||
|
|
||
| # Translations | ||
| *.mo | ||
|
|
||
| # Mr Developer | ||
| .mr.developer.cfg | ||
| /.settings | ||
| /src/spec2nexus/__plots__ |
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,10 +1,8 @@ | ||
| <?xml version="1.0" encoding="UTF-8" standalone="no"?> | ||
| <?eclipse-pydev version="1.0"?> | ||
|
|
||
| <pydev_project> | ||
| <pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Default</pydev_property> | ||
| <pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python 2.7</pydev_property> | ||
| <pydev_pathproperty name="org.python.pydev.PROJECT_SOURCE_PATH"> | ||
| <path>/${PROJECT_DIR_NAME}/src</path> | ||
| </pydev_pathproperty> | ||
| </pydev_project> | ||
| <?xml version="1.0" encoding="UTF-8" standalone="no"?> | ||
| <?eclipse-pydev version="1.0"?><pydev_project> | ||
| <pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Anaconda-Stock</pydev_property> | ||
| <pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python 2.7</pydev_property> | ||
| <pydev_pathproperty name="org.python.pydev.PROJECT_SOURCE_PATH"> | ||
| <path>/${PROJECT_DIR_NAME}/src</path> | ||
| </pydev_pathproperty> | ||
| </pydev_project> |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,91 +1,91 @@ | ||
| .. | ||
| This file describes user-visible changes between the versions. | ||
| Change History | ||
| ############## | ||
|
|
||
| Production | ||
| ********** | ||
|
|
||
| :2016.0615.1: `issue #57 <https://github.com/prjemian/spec2nexus/issues/57>`_: keep information from unrecognized control lines, | ||
| `issue #56 <https://github.com/prjemian/spec2nexus/issues/56>`_: add *specplot* support, | ||
| `issue #55 <https://github.com/prjemian/spec2nexus/issues/55>`_: accept arbitrary number of MCA spectra | ||
| :2016.0601.0: match complete keys, use unix EOL internally, do not fail if no metadata | ||
| :2016.0216.0: `issue #36 <https://github.com/prjemian/spec2nexus/issues/36>`_: identify NIAC2014-compliant NeXus files | ||
| :2016.0210.0: bugfix: eznx.makeGroup() now correctly sets attributes on new group + documentation for NIAC2014 attributes | ||
| :2016.0204.0: (`#45 <https://github.com/prjemian/spec2nexus/issues/45>`_) handle case when no data points in scan , | ||
| (`#46 <https://github.com/prjemian/spec2nexus/issues/46>`_) spec.getScan() ensures argument is used as ``str`` | ||
| :2016.0201.0: added spec.getScanNumbersChronological(), spec.getFirstScanNumber(), and spec.getLastScanNumber() | ||
| :2016.0131.0: support new NeXus method for default/signal/axes/_indices, | ||
| `issue #43 <https://github.com/prjemian/spec2nexus/issues/43>`_ | ||
| :2016.0130.0: fixed `issue #44 <https://github.com/prjemian/spec2nexus/issues/44>`_ | ||
| :2015.1221.1: added versioneer support (`issue #40 <https://github.com/prjemian/spec2nexus/issues/40>`_) | ||
| :2015.1221.0: read scans with repeated scan numbers | ||
| (`issue #39 <https://github.com/prjemian/spec2nexus/issues/39>`_) | ||
| :2015.0822.0: extractSpecScan: add option to report scan heading data, such as positioners and Q | ||
| :2015.0214.0: h5toText: handle HDF5 'O' data type (variable length strings) | ||
| :2015.0127.0: spec: ignore bad data lines | ||
| :2015.0125.0: spec: change handling of #L & #X, refactor detection of scanNum and scanCmd | ||
| :2015.0113.0: dropped requirement of *lxml* package | ||
| :2014.1228.1: spec: build mne:name cross-references for counters and positioners | ||
| :2014.1228.0: show version in documentation | ||
| :2014.1028.0: spec: quietly ignore unrecognized scan content *for now* | ||
| :2014.1027.1: spec: major changes in SPEC file support: **custom plugins** | ||
|
|
||
| * **spec** based on plugins for each control line, users can add plugins | ||
| * declared **prjPySpec** module as legacy, code is frozen at *2014.0623.0* release | ||
| * added **spec** module to replace **prjPySpec** | ||
|
|
||
| :2014.0623.0: updated argparse settings | ||
| :2014.0622.2: added extractSpecScan.py to the suite from the USAXS project | ||
| :2014.0410.0: restore scan.fileName variable to keep interface the same for some legacy clients | ||
| :2014.0404.1: fix sdist utf8 problem, see: http://bugs.python.org/issue11638 | ||
| :2014.0404.0: tree_api_parser moved back into NeXpy project | ||
| :2014.0320.6: handle multiple header sections in SPEC data file | ||
| :2014.0320.5: fix the new project URL | ||
| :2014.0320.4: Sphinx cannot build PDF with code-block in a footnote | ||
| :2014.0320.3: note the new home URL in the packaging, too, drop nexpy requirement, default docs theme | ||
| :2014.0320.2: tree_api_parse will go back into nexpy project, remove docs of it here | ||
| :2014.0320.1: allow readthedocs to build Sphinx without extra package requirements | ||
| :2014.0320.0: | ||
|
|
||
| * new home page at http://spec2nexus.readthedocs.org, easier to publish there | ||
| * move common methods from __init__.py so docs will build at readthedocs.org | ||
| * new test case fails existing SPEC reader, ignore blank lines | ||
|
|
||
| :2014.03.11: documentation | ||
| :2014.03.09: h5toText: option to suppress printing of attributes, put URLs in command-line usage documentation, better test of is_spec_file() | ||
| :2014.03.08: fixed string writer and content display bug in eznx, added h5toText.py, prjPySpec docs improved again | ||
| :2014.03.051: prjPySpec now handles SPEC v6 data file header additions, add new getScanCommands() method | ||
| :2014.03.04: (2014_Mardi_Gras release) removed nexpy project requirement from setup, prjPySpec raises exceptions now | ||
| :2014.03.02: drops nexus tree API (and its dependencies) in favor of native h5py writer | ||
|
|
||
| Development: GitHub repository | ||
| ****************************** | ||
|
|
||
| :2014.02.20: version number fits PEP440, LICENSE file included in sdist, more documentation and examples | ||
| :2014-02-19: reference published documentation (re-posted) | ||
| :2014-02-19: add documentation framework | ||
| :2014-02-18: fork to GitHub to make generally available | ||
|
|
||
| Development: NeXpy branch | ||
| ************************* | ||
|
|
||
| :2014-01: briefly, a branch in https://github.com/nexpy/nexpy | ||
|
|
||
| * spec2nexus added during this phase | ||
| * relies on nexpy.api.nexus for NeXus support | ||
|
|
||
| Production: USAXS livedata | ||
| ************************** | ||
|
|
||
| :2010-2014: production use | ||
|
|
||
| * support livedata WWW page of APS USAXS instrument | ||
|
|
||
| * (http://usaxs.xray.aps.anl.gov/livedata/), | ||
|
|
||
| * https://subversion.xray.aps.anl.gov/trac/small_angle/browser/USAXS/livedata/prjPySpec.py | ||
| * converted from Tcl | ||
|
|
||
| :2000-2010: Tcl code (*readSpecData.tcl*) in production use at APS sectors 32, 33, & 34 | ||
| .. | ||
| This file describes user-visible changes between the versions. | ||
| Change History | ||
| ############## | ||
|
|
||
| Production | ||
| ********** | ||
|
|
||
| :2016.0615.1: `issue #57 <https://github.com/prjemian/spec2nexus/issues/57>`_: keep information from unrecognized control lines, | ||
| `issue #56 <https://github.com/prjemian/spec2nexus/issues/56>`_: add *specplot* support, | ||
| `issue #55 <https://github.com/prjemian/spec2nexus/issues/55>`_: accept arbitrary number of MCA spectra | ||
| :2016.0601.0: match complete keys, use unix EOL internally, do not fail if no metadata | ||
| :2016.0216.0: `issue #36 <https://github.com/prjemian/spec2nexus/issues/36>`_: identify NIAC2014-compliant NeXus files | ||
| :2016.0210.0: bugfix: eznx.makeGroup() now correctly sets attributes on new group + documentation for NIAC2014 attributes | ||
| :2016.0204.0: (`#45 <https://github.com/prjemian/spec2nexus/issues/45>`_) handle case when no data points in scan , | ||
| (`#46 <https://github.com/prjemian/spec2nexus/issues/46>`_) spec.getScan() ensures argument is used as ``str`` | ||
| :2016.0201.0: added spec.getScanNumbersChronological(), spec.getFirstScanNumber(), and spec.getLastScanNumber() | ||
| :2016.0131.0: support new NeXus method for default/signal/axes/_indices, | ||
| `issue #43 <https://github.com/prjemian/spec2nexus/issues/43>`_ | ||
| :2016.0130.0: fixed `issue #44 <https://github.com/prjemian/spec2nexus/issues/44>`_ | ||
| :2015.1221.1: added versioneer support (`issue #40 <https://github.com/prjemian/spec2nexus/issues/40>`_) | ||
| :2015.1221.0: read scans with repeated scan numbers | ||
| (`issue #39 <https://github.com/prjemian/spec2nexus/issues/39>`_) | ||
| :2015.0822.0: extractSpecScan: add option to report scan heading data, such as positioners and Q | ||
| :2015.0214.0: h5toText: handle HDF5 'O' data type (variable length strings) | ||
| :2015.0127.0: spec: ignore bad data lines | ||
| :2015.0125.0: spec: change handling of #L & #X, refactor detection of scanNum and scanCmd | ||
| :2015.0113.0: dropped requirement of *lxml* package | ||
| :2014.1228.1: spec: build mne:name cross-references for counters and positioners | ||
| :2014.1228.0: show version in documentation | ||
| :2014.1028.0: spec: quietly ignore unrecognized scan content *for now* | ||
| :2014.1027.1: spec: major changes in SPEC file support: **custom plugins** | ||
|
|
||
| * **spec** based on plugins for each control line, users can add plugins | ||
| * declared **prjPySpec** module as legacy, code is frozen at *2014.0623.0* release | ||
| * added **spec** module to replace **prjPySpec** | ||
|
|
||
| :2014.0623.0: updated argparse settings | ||
| :2014.0622.2: added extractSpecScan.py to the suite from the USAXS project | ||
| :2014.0410.0: restore scan.fileName variable to keep interface the same for some legacy clients | ||
| :2014.0404.1: fix sdist utf8 problem, see: http://bugs.python.org/issue11638 | ||
| :2014.0404.0: tree_api_parser moved back into NeXpy project | ||
| :2014.0320.6: handle multiple header sections in SPEC data file | ||
| :2014.0320.5: fix the new project URL | ||
| :2014.0320.4: Sphinx cannot build PDF with code-block in a footnote | ||
| :2014.0320.3: note the new home URL in the packaging, too, drop nexpy requirement, default docs theme | ||
| :2014.0320.2: tree_api_parse will go back into nexpy project, remove docs of it here | ||
| :2014.0320.1: allow readthedocs to build Sphinx without extra package requirements | ||
| :2014.0320.0: | ||
|
|
||
| * new home page at http://spec2nexus.readthedocs.org, easier to publish there | ||
| * move common methods from __init__.py so docs will build at readthedocs.org | ||
| * new test case fails existing SPEC reader, ignore blank lines | ||
|
|
||
| :2014.03.11: documentation | ||
| :2014.03.09: h5toText: option to suppress printing of attributes, put URLs in command-line usage documentation, better test of is_spec_file() | ||
| :2014.03.08: fixed string writer and content display bug in eznx, added h5toText.py, prjPySpec docs improved again | ||
| :2014.03.051: prjPySpec now handles SPEC v6 data file header additions, add new getScanCommands() method | ||
| :2014.03.04: (2014_Mardi_Gras release) removed nexpy project requirement from setup, prjPySpec raises exceptions now | ||
| :2014.03.02: drops nexus tree API (and its dependencies) in favor of native h5py writer | ||
|
|
||
| Development: GitHub repository | ||
| ****************************** | ||
|
|
||
| :2014.02.20: version number fits PEP440, LICENSE file included in sdist, more documentation and examples | ||
| :2014-02-19: reference published documentation (re-posted) | ||
| :2014-02-19: add documentation framework | ||
| :2014-02-18: fork to GitHub to make generally available | ||
|
|
||
| Development: NeXpy branch | ||
| ************************* | ||
|
|
||
| :2014-01: briefly, a branch in https://github.com/nexpy/nexpy | ||
|
|
||
| * spec2nexus added during this phase | ||
| * relies on nexpy.api.nexus for NeXus support | ||
|
|
||
| Production: USAXS livedata | ||
| ************************** | ||
|
|
||
| :2010-2014: production use | ||
|
|
||
| * support livedata WWW page of APS USAXS instrument | ||
|
|
||
| * (http://usaxs.xray.aps.anl.gov/livedata/), | ||
|
|
||
| * https://subversion.xray.aps.anl.gov/trac/small_angle/browser/USAXS/livedata/prjPySpec.py | ||
| * converted from Tcl | ||
|
|
||
| :2000-2010: Tcl code (*readSpecData.tcl*) in production use at APS sectors 32, 33, & 34 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,30 +1,30 @@ | ||
| spec2nexus | ||
| ########## | ||
|
|
||
| Converts SPEC data files and scans into NeXus HDF5 files | ||
|
|
||
| :author: Pete R. Jemian | ||
| :email: prjemian@gmail.com | ||
| :copyright: 2014-2016, Pete R. Jemian | ||
| :license: Creative Commons Attribution 4.0 International Public License (see *LICENSE.txt*) | ||
| :URL: http://spec2nexus.readthedocs.io | ||
| :git: https://github.com/prjemian/spec2nexus | ||
| :PyPI: https://pypi.python.org/pypi/spec2nexus/ | ||
| :Ohloh: http://ohloh.net/p/spec2nexus | ||
|
|
||
| Provides | ||
| ######## | ||
|
|
||
| * **spec2nexus** : command-line tool: Convert SPEC data files to NeXus HDF5 | ||
| * **h5toText** : command-line tool: Print the structure of an HDF5 file | ||
| * **extractSpecScan** : command-line tool: Save columns from SPEC data file scan(s) to TSV files | ||
| * **pySpec** : library: python binding to read SPEC [#]_ data files | ||
| * **prjPySpec** : library: legacy version of **pySpec**, frozen at version 2014.0623.0 | ||
| * **eznx** : library: (Easy NeXus) supports writing NeXus [#]_ HDF5 [#]_ files using h5py [#]_ | ||
| * **specplot** : command-line tool: plot a SPEC scan to an image file | ||
| * **specplot_gallery** : command-line tool: call **specplot** for all scans in a list of files, makes a web gallery | ||
|
|
||
| .. [#] http://certif.com | ||
| .. [#] http://nexusformat.org | ||
| .. [#] http://hdfgroup.org | ||
| .. [#] http://h5py.org | ||
| spec2nexus | ||
| ########## | ||
|
|
||
| Converts SPEC data files and scans into NeXus HDF5 files | ||
|
|
||
| :author: Pete R. Jemian | ||
| :email: prjemian@gmail.com | ||
| :copyright: 2014-2016, Pete R. Jemian | ||
| :license: Creative Commons Attribution 4.0 International Public License (see *LICENSE.txt*) | ||
| :URL: http://spec2nexus.readthedocs.io | ||
| :git: https://github.com/prjemian/spec2nexus | ||
| :PyPI: https://pypi.python.org/pypi/spec2nexus/ | ||
| :Ohloh: http://ohloh.net/p/spec2nexus | ||
|
|
||
| Provides | ||
| ######## | ||
|
|
||
| * **spec2nexus** : command-line tool: Convert SPEC data files to NeXus HDF5 | ||
| * **h5toText** : command-line tool: Print the structure of an HDF5 file | ||
| * **extractSpecScan** : command-line tool: Save columns from SPEC data file scan(s) to TSV files | ||
| * **pySpec** : library: python binding to read SPEC [#]_ data files | ||
| * **prjPySpec** : library: legacy version of **pySpec**, frozen at version 2014.0623.0 | ||
| * **eznx** : library: (Easy NeXus) supports writing NeXus [#]_ HDF5 [#]_ files using h5py [#]_ | ||
| * **specplot** : command-line tool: plot a SPEC scan to an image file | ||
| * **specplot_gallery** : command-line tool: call **specplot** for all scans in a list of files, makes a web gallery | ||
|
|
||
| .. [#] http://certif.com | ||
| .. [#] http://nexusformat.org | ||
| .. [#] http://hdfgroup.org | ||
| .. [#] http://h5py.org |
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