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Debug docs #64

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Jun 14, 2019
Merged

Debug docs #64

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1c49ac6
updated headers
Jun 14, 2019
4cb75a8
updated links to be compatible with docs
Jun 14, 2019
8ae0be1
updated docs for utilities
Jun 14, 2019
eca36b9
updated docs
Jun 14, 2019
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4 changes: 2 additions & 2 deletions CHANGELOG.rst
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Expand Up @@ -2,7 +2,7 @@ Changelog
=========

v1.8.0 ()
----------------------
---------
- Added acceptance rate display feature when calling chain statistics
- User can specify `skip` or `maxpoints` in pairwise correlation and chain panel plots in order to thin chain.
- User can request item definitions when calling `chainstats`.
Expand All @@ -21,7 +21,7 @@ v1.7.0 (April 5, 2019)
- Added original covariance matrix to results structure for reference.

v1.6.0 (August 31, 2018)
----------------------
------------------------
.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1407136.svg
:target: https://doi.org/10.5281/zenodo.1407136

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7 changes: 2 additions & 5 deletions README.rst
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Expand Up @@ -37,11 +37,8 @@ Getting Started

- `Tutorial notebooks <https://nbviewer.jupyter.org/github/prmiles/notebooks/tree/master/pymcmcstat/index.ipynb>`_
- `Documentation <http://pymcmcstat.readthedocs.io/>`_
- `Release history`_
- `Contributing guidelines`_

.. _Release history: CHANGELOG.rst
.. _Contributing guidelines: CONTRIBUTING.rst
- `Release history <https://github.com/prmiles/pymcmcstat/blob/master/CHANGELOG.rst>`_
- `Contributing guidelines <https://github.com/prmiles/pymcmcstat/blob/master/CONTRIBUTING.rst>`_

License
=======
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4 changes: 3 additions & 1 deletion pymcmcstat/samplers/utilities.py
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Expand Up @@ -105,6 +105,7 @@ def set_outside_bounds(next_set):
def posterior_ratio_acceptance_test(alpha):
'''
Run posterior ratio acceptance test

Args:
* **alpha** (:py:class:`float`): Posterior ratio
Returns:
Expand All @@ -120,6 +121,7 @@ def posterior_ratio_acceptance_test(alpha):
def log_posterior_ratio_acceptance_test(alpha):
'''
Run log posterior ratio acceptance test

Args:
* **alpha** (:py:class:`float`): Log posterior ratio
Returns:
Expand Down Expand Up @@ -149,7 +151,7 @@ def calculate_log_posterior_ratio(loglikestar, loglike,

.. note::
The default behavior of the package is to use Gaussian
likelihood and prior functions (as of v1.7.0). Future releases
likelihood and prior functions (as of v1.8.0). Future releases
will expand the functionality to allow for alternative likelihood
and prior definitions.

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