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override GOOD_SEQID and GOOD_COVERAGE with seqid and coverage if higher #1824

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merged 2 commits into from
Feb 8, 2024
Merged

override GOOD_SEQID and GOOD_COVERAGE with seqid and coverage if higher #1824

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04efe47
override GOOD_SEQID with seqid if higher
jamesmkrieger Feb 8, 2024
0459ab7
Merge branch 'master' of github.com:prody/ProDy into override_good_seqid
jamesmkrieger Feb 8, 2024
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4 changes: 2 additions & 2 deletions prody/proteins/compare.py
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Original file line number Diff line number Diff line change
Expand Up @@ -997,8 +997,8 @@ def mapChainOntoChain(mobile, target, **kwargs):
simple_target, simple_mobile)
_seqid, _cover = calcScores(n_match, n_mapped, len(simple_target))

trivial_seqid = GOOD_SEQID if pwalign else seqid
trivial_cover = GOOD_COVERAGE if pwalign else coverage
trivial_seqid = max(GOOD_SEQID, seqid) if pwalign else seqid
trivial_cover = max(GOOD_COVERAGE, coverage) if pwalign else coverage
if _seqid >= trivial_seqid and _cover >= trivial_cover:
LOGGER.debug('\tMapped: {0} residues match with {1:.0f}% '
'sequence identity and {2:.0f}% overlap.'
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