The ICDOntologies repository provides a list of mapping files in YAML format, as input for mapping combinations of ICD-O 3 Morphology and Topography codes to NCIt neoplasm core entities.
The repository is being developed by the Theoretical Oncogenomics group at the University of Zurich. It reflects work performed for the arrayMap and Progenetix resources and as part of the Global Alliance for Genomics and Health (GA4GH).
This repository contains mappings that have been manually curated and aims to be an open source for use and contibutions.
The mappings can be accessed through the Progenetix API, as seen in these examples:
- Retrieving the matching ncit code(s) from an input of comma-separated icdom and icdot values, as key (code) : value (label) objects
- As in the example above, but by stemmming the query parameters the response will now be a list of matched data objects (inputs and equivalents)
Further documentation about the Progenetix API can be accessed through the resource's documentation pages.