-
Notifications
You must be signed in to change notification settings - Fork 324
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
About Pretraining Data Formats #59
Comments
Hi, @ahatamiz : I noticed that the naming rules in the json file are different from the naming rules of the database. For example, in dataset_TCIAcolon_v2_0.json file, the images are named like this: img_19.nii.gz, but in the TCIA CT Colonography Trial database, the directory paths are like this: Finally, thanks again for your excellent work and contributions to open source code. Best wishes ! |
Thanks a lot to your team. |
@WYC-321 I have the same issue with the code. Could you manage to work it out? |
I also download the datasets and try to follow the split in the JSON file. However, for HSNCC as well as TCIAcolon, it's hard to convert to the required nifty file from the downloaded dataset. Because I can't find the corresponding relationship. |
@JiaxinZhuang @WYC-321 did you manage to figure it out? I'm also struggling with the naming relationship for the datasets (HNSCC and COLON). |
I downloaded the dataset for pre-training on TCIA, but I found that the downloaded data format is .dcm, which is inconsistent with the format of .nii.gz in the json file. I wonder if something is done to do the format conversion?
The text was updated successfully, but these errors were encountered: