Check genome updates

Search in a database if your genome code protein at it several ORFs

Table of contents

• Description of the actual files :
  • Installation
  • Commande line help
  • Warnings
  • Usages
  • Issues
• History
• License

Installation

You must have python 3.0 installed

Description of the actual files :

The different database add new sequence all the time, and do you know if proteins discover coded by several ORF are You can run the script routinly

Warnings :

The target for exctract the sequence of the ORF in GFF3 file is the product=ORFX where X is the number of ORF, you must check if this is write like this

Usage :

Ou lancer la commande

• Crée un dossier correspondant au nom du génome utilisé
• appelé le script la ou le dossier a été créé

Comment lancer la commande

On your terminal

python3 ~/PATH/check_updates.py -g ~/genomeFastaSequence.fasta -a ~/genomeGFF3Sequence.gff3 -o outputFile -n 4

• v -> Version du programme
• PATH -> is where did you put the file check_updates.py
• genomeFastaSequence.fasta -> is where you put the sequence of your genome in your computer, don't forget to write the path to this genome
• genomeGFF3Sequence.gff3 -> is the path and the name of the gff3 file of your genome
• Le nombre d'ORF connue dans la littérature