Added version 0.12.1

0.12.1/Dockerfile

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+FROM quay.io/biocontainers/fastqc:0.12.1--0
+
+LABEL "MAINTAINER"="icaoberg"
+LABEL "EMAIL"="icaoberg@psc.edu"
+LABEL "SUPPORT"="help@psc.edu"
+LABEL "REPOSITORY"="http://github.com/pscedu/singularity-fastqc"
+LABEL "COPYRIGHT"="Copyright © 2021-2023 Pittsburgh Supercomputing Center. All Rights Reserved."
+LABEL "VERSION"="0.12.1"
+
+ENV LC_ALL C.UTF-8
+RUN locale

0.12.1/README.md

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+# README
+## About
+Source code repository can be found [here](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/).
+
+## Building the container for Bridges (or similar)
+There is no need to build a container, because an image is already available from the Galaxy project, hence all you need to do is run
+
+```
+bash ./pull.sh
+```
+
+## Installing the container on Bridges (or similar)
+Copy the
+
+* `SIF` file
+* and the `fastqc` script
+
+to `/opt/packages/fastqc/0.12.1`.
+
+Copy the file `modulefile` to `/opt/modules/fastqc` as `0.12.1`.
+
+## Test
+To run the available tests, run the command
+
+```
+bash ./test.sh
+```
+
+---
+[![PSC](http://www.andrew.cmu.edu/user/icaoberg/images/logos/psc.png)](http://www.psc.edu)
+
+[icaoberg](http://www.andrew.cmu.edu/~icaoberg) at the [Pittsburgh Supercomputing Center](http://www.psc.edu) in the [Mellon College of Science](https://www.cmu.edu/mcs/) at [Carnegie Mellon University](http://www.cmu.edu).

0.12.1/Singularity

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+Bootstrap: docker
+From: quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0 
+
+%labels
+    MAINTAINER icaoberg
+    EMAIL icaoberg@psc.edu
+    SUPPORT help@psc.edu
+    REPOSITORY http://gitub.com/pscedu/singularity-fastqc
+    COPYRIGHT Copyright © 2021 Pittsburgh Supercomputing Center. All Rights Reserved.    
+    VERSION 0.12.1
+
+%environment
+    export LC_ALL=C.UTF-8
+
+%post
+    locale

0.12.1/build.sh

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+#!/bin/bash
+
+# Copyright © 2021 Pittsburgh Supercomputing Center.
+# All Rights Reserved.
+
+IMAGE=singularity-FastQC-0.12.1.sif
+DEFINITION=Singularity
+
+if [ -f $IMAGE ]; then
+	rm -fv $IMAGE
+fi
+
+sudo singularity build $IMAGE $DEFINITION
+
+if [ -f $IMAGE ]; then
+	exit 0
+else
+	exit 1
+fi

0.12.1/dbuild.sh

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+#!/bin/bash
+
+# Copyright © 2021 Pittsburgh Supercomputing Center.
+# All Rights Reserved.
+
+docker build -t icaoberg/fastqc:0.12.1 .

0.12.1/fastqc

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+#!/bin/bash
+
+if [ ! $(command -v singularity) ]; then
+	module load singularity
+fi
+
+VERSION=0.12.1
+PACKAGE=FastQC
+TOOL=fastqc
+DIRECTORY=$(dirname $0)
+
+PERSISTENT_FILE_STORAGE=/ocean
+if [ -d $PERSISTENT_FILE_STORAGE ]; then
+	OPTIONS="-B $PERSISTENT_FILE_STORAGE"
+fi
+
+if [ -d /local ]; then
+	OPTIONS=$OPTIONS" -B /local"
+fi
+
+singularity exec $OPTIONS $DIRECTORY/singularity-$PACKAGE-$VERSION.sif $TOOL "$@"

0.12.1/modulefile.lua

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+--
+-- FastQC 0.12.1 modulefile
+--
+-- "URL: https://www.psc.edu/resources/software"
+-- "Category: Biological Sciences"
+-- "Description: FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines."
+-- "Keywords: singularity bioinformatics"
+
+whatis("Name: FastQC")
+whatis("Version: 0.12.1")
+whatis("Category: Biological Sciences")
+whatis("URL: https://www.psc.edu/resources/software")
+whatis("Description: FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.")
+
+help([[
+FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.
+
+To load the module, type
+
+> module load FastQC/0.12.1
+
+To unload the module, type
+
+> module unload FastQC/0.12.1
+
+Documentation
+-------------
+https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
+
+For help, type
+
+> fastqc --help
+
+Repository
+----------
+https://github.com/s-andrews/FastQC
+
+Tools included in this module are
+
+* fastqc
+]])
+
+local package = "FastQC"
+local version = "0.12.1"
+local base    = pathJoin("/opt/packages",package,version)
+prepend_path("PATH", base)

0.12.1/rbuild.sh

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+#!/bin/bash
+
+# Copyright © 2021 Pittsburgh Supercomputing Center.
+# All Rights Reserved.
+
+IMAGE=singularity-FastQC-0.12.1.sif
+DEFINITION=Singularity
+
+if [ -f $IMAGE ]; then
+	rm -fv $IMAGE
+fi
+
+singularity build --remote $IMAGE $DEFINITION
+
+if [ -f $IMAGE ]; then
+	exit 0
+else
+	exit 1
+fi

0.12.1/test.sh

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+#!/bin/bash
+
+tree .