Skip to content

Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.

License

Notifications You must be signed in to change notification settings

pscedu/singularity-guppy

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

8 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Status Status Issue forks Stars License

singularity-guppy

Singularity recipe for guppy.

Installing the container on Bridges 2

Copy the

  • SIF file
  • and the scripts

to /opt/packages/guppy/6.0.0.

Copy the file modulefile.lua to /opt/modulefiles/guppy as 6.0.0.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

To run tests

To run the available tests, run the command

bash ./test.sh

Copyright © 2020-2024 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.

About

Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.

Topics

Resources

License

Stars

Watchers

Forks

Releases

No releases published