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bioformats from pip can be used instead of the fork
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pskeshu committed Jul 27, 2017
1 parent 9562a4a commit 4b4aa02
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17 changes: 0 additions & 17 deletions readme.md
Expand Up @@ -4,23 +4,6 @@ Microscoper is a simple wrapper for `python-bioformats`, with added features, su

## Installation

### python-bioformats

This package requires a forked `python-bioformats` from `pskeshu/python-bioformats`.

This can be installed directly with `pip`, and this is an essential step before installing `microscoper`.

pip install git+http://github.com/pskeshu/python-bioformats.git@1.1.0s#egg=python-bioformats-1.1.0s

You can also install the forked `python-bioformats` by cloning the repository from github.

git clone https://github.com/pskeshu/python-bioformats.git
cd python-bioformats
git checkout scblab
python setup.py install

### microscoper

To install `microscoper` with `pip`

pip install microscoper
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3 changes: 2 additions & 1 deletion setup.py
Expand Up @@ -9,6 +9,7 @@
packages=['microscoper'],
install_requires=['numpy>=1.13.1',
'tifffile>=0.12.1',
'tqdm>=4.11.2'],
'tqdm>=4.11.2',
'python-bioformats>=1.1.0'],
license='MIT',
zip_safe=False)

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