style_grayscale.css

/* -*- Mode: CSS; tab-width: 2; indent-tabs-mode: nil; -*- */
/* vim:set ft=css ts=2 sw=2 sts=2 autoindent: */

html {
  overflow-y: scroll;
  font-family: 'Century Gothic', sans-serif;
  font-size: 12px;
}

#svg {
  margin-top: 50px;
  margin-bottom: 100px;
}

svg {
  width: 100%;
  height: 1px;
  border: 1px solid #a1a1a1;
}

text {
  font-size: 14px;
  font-family: serif;
}

#header {
  position: fixed;
  top: 0;
  left: 0;
  right: 0;
  height: 40px;
  padding: 2px 5px;
  background-color: #ffffff;
  border-bottom: 1px solid #a1a1a1;
  overflow: hidden;
}

path {
  pointer-events: none;
}

.span text {
  font-size: 75%;
  text-anchor: middle;
  font-family: sans-serif;
  pointer-events: none;
}

.span rect {
  stroke: black;
  stroke-width: 0.75;
}

.span rect.False_positive {
  stroke: #4c4c4c;
  stroke-width: 2;
}
#infopopup.info_False_positive {
  background-color: #9f9f9f;
}

.span rect.False_negative {
  stroke: #4c4c4c;
  fill: #ffffff;
  stroke-width: 2;
}

.shadow_AnnotationError {
  fill: #4c4c4c;
}
.span rect.AnnotationError {
  stroke-width: 1;
}
#infopopup.info_AnnotationError {
  background-color: #9f9f9f;
}

.shadow_AnnotationWarning {
  fill: #9c9c9c;
}
.span rect.AnnotationWarning {
  stroke-width: 1;
}
#infopopup.info_AnnotationWarning {
  background-color: #a6a6a6;
}

.shadow_AnnotationIncomplete {
  fill: #aaaaaa;
}
.span rect.AnnotationIncomplete {
  stroke: #141414;
  stroke-width: 0.5;
  fill: #ffffff;
}
#infopopup.info_AnnotationIncomplete {
  background-color: #f0f0f0;
}

.shadow_AnnotationUnconfirmed {
  fill: #eeeeee;
}
.span rect.AnnotationUnconfirmed {
  stroke: #141414;
  stroke-width: 0.5;
  opacity : 0.5;
}
#infopopup.info_AnnotationUnconfirmed {
  background-color: #e0e0e0;
}

.span rect.True_positive {
  /* stroke: #464646; */
}

rect.shadow_EditHighlight {
  fill: #f3f3f3;
  stroke: #cfcfcf;
}
.shadow_EditHighlight_arc {
  stroke: #f3f3f3;
}

.span path {
  fill: none;
  stroke: grey;
}

.span path.negation {
  stroke: black;
  opacity: 0.5;
}

.arcs path {
  fill: none;
  opacity: 0.5;
}

.arcs .highlight path {
  stroke-width: 1.5;
  opacity: 1;
}
.arcs .highlight text {
  stroke: black;
  fill: black;
  stroke-width: 0.5;
}
.span.highlight rect {
  stroke-width: 2px;
}

.arcs text {
  text-anchor: middle;
  font-size: 80%;
  dominant-baseline: central;
  cursor: default;
}

.background0 {
  stroke: none;
  fill: #ffffff;
}

.background1 {
  stroke: none;
  fill: #eeeeee;
}

.backgroundHighlight {
  stroke: none;
  fill: #f3f3f3;
}

.background_entity {
  fill: #a1a1a1;
  opacity: 0.25;
}

.background_trigger {
  fill: #b2b2b2;
  opacity: 0.25;
}

.sentnum text {
  fill: #999999;
  text-anchor: end;
}

.sentnum path {
  stroke: #999999;
  stroke-width: 1px;
}

.span_default {
  fill: #bbbbbb;
}

.span_Exp { fill:#4c4c4c; }

.span_gene-or-gene-product    { fill: #a1a1a1; }
.span_Protein                 { fill: #a1a1a1; }
.span_Protein_family_or_group { fill: #a1a1a1; }
.span_Protein_complex         { fill: #a1a1a1; }
.span_Protein_molecule        { fill: #a1a1a1; }
.span_RNA_molecule            { fill: #a1a1a1; }
.span_DNA_molecule            { fill: #a1a1a1; }
.span_DNA_family_or_group     { fill: #a1a1a1; }

.span_Chemical                { fill: #c1c1c1; }
.span_Carbohydrate            { fill: #c1c1c1; }
.span_Drug_or_compound        { fill: #c1c1c1; }
.span_Other_pharmaceutical_agent { fill: #c1c1c1; }

.span_Gene_or_gene_product    { fill: #a1a1a1; }

.span_Lipid {
  fill: #bebebe;
}

.span_Cell_natural            { fill: #b7b7b7; }
.span_Cell_cultured           { fill: #b7b7b7; }
.span_Virus                   { fill: #b7b7b7; }
.span_Organism                { fill: #b7b7b7; }
.span_Tissue                  { fill: #b7b7b7; }
.span_Cell_type               { fill: #b7b7b7; }

.span_Organic_compound_other  { fill: #bebebe; }

.span_Positive_regulation     { fill: #d9d9d9; }
.span_Catalysis               { fill: #d9d9d9; }
.span_Regulation              { fill: #e2e2e2; }
.span_Negative_regulation     { fill: #d0d0d0; }

.span_Deacetylation     { fill: #8c8c8c; }
.span_Deglycosylation   { fill: #8c8c8c; }
.span_Dehydroxylation   { fill: #8c8c8c; }
.span_Demethylation     { fill: #8c8c8c; }
.span_Dephosphorylation { fill: #8c8c8c; }
.span_Deubiquitination  { fill: #8c8c8c; }
.span_DNA_demethylation { fill: #8c8c8c; }
.span_Deacylation       { fill: #8c8c8c; }
.span_Dealkylation      { fill: #8c8c8c; }
.span_Depalmitoylation  { fill: #8c8c8c; }
.span_Delipidation      { fill: #8c8c8c; }
.span_Deprenylation     { fill: #8c8c8c; }
.span_Deneddylation     { fill: #8c8c8c; }
.span_Desumoylation     { fill: #8c8c8c; }

.span_Process           { fill: #c5c5c5; }

.fill_scatter           { fill: #4c4c4c; }
.stroke_scatter         { stroke: #4c4c4c; }
.fill_coref             { fill: #4c4c4c; }
.stroke_coref           { stroke: #4c4c4c; }
.fill_Coref             { fill: #4c4c4c; }
.stroke_Coref           { stroke: #4c4c4c; }
.fill_Protein-Component { fill: #4c4c4c; }
.stroke_Protein-Component { stroke: #4c4c4c; }

.span_Entity                   { fill: #c8c8c8; }
.span_DNA_domain_or_region     { fill: #c8c8c8; }
.span_Protein_domain_or_region { fill: #c8c8c8; }
.span_Amino_acid_monomer       { fill: #c8c8c8; }
.span_Polynucleotide           { fill: #c8c8c8; }

.span_Two-component-system     { fill: #a4a4a4; }
.span_Regulon-operon           { fill: #a4a4a4; }

.span_Experimental_method { fill: #e2e2e2; }

.span_Other        { fill: #4c4c4c; }
.span_UNCLASSIFIED { fill: #4c4c4c; }

.fill_theme    { fill:   #000000; }
.stroke_theme  { stroke: #000000; }
.fill_Theme    { fill:   #000000; }
.stroke_Theme  { stroke: #000000; }
.fill_Theme1   { fill:   #000000; }
.stroke_Theme1 { stroke: #000000; }
.fill_Theme2   { fill:   #000000; }
.stroke_Theme2 { stroke: #000000; }
.fill_Theme3   { fill:   #000000; }
.stroke_Theme3 { stroke: #000000; }
.fill_Theme4   { fill:   #000000; }
.stroke_Theme4 { stroke: #000000; }

.fill_Participant   { fill:   #000000; }
.stroke_Participant { stroke: #000000; }

.fill_cause    { fill:   #464646; }
.stroke_cause  { stroke: #464646; }
.fill_Cause    { fill:   #464646; }
.stroke_Cause  { stroke: #464646; }
.fill_Cause1   { fill:   #464646; }
.stroke_Cause1 { stroke: #464646; }
.fill_Cause2   { fill:   #464646; }
.stroke_Cause2 { stroke: #464646; }
.fill_Cause3   { fill:   #464646; }
.stroke_Cause3 { stroke: #464646; }
.fill_Cause4   { fill:   #464646; }
.stroke_Cause4 { stroke: #464646; }

.fill_Site     { fill:   #121212; }
.stroke_Site   { stroke: #121212; }
.fill_Site1    { fill:   #121212; }
.stroke_Site1  { stroke: #121212; }
.fill_Site2    { fill:   #121212; }
.stroke_Site2  { stroke: #121212; }
.fill_Site3    { fill:   #121212; }
.stroke_Site3  { stroke: #121212; }
.fill_Site4    { fill:   #121212; }
.stroke_Site4  { stroke: #121212; }

.fill_CSite    { fill:   #121212; }
.stroke_CSite  { stroke: #121212; }

.fill_ToLoc    { fill:   #161616; }
.stroke_ToLoc  { stroke: #161616; }

.fill_AtLoc    { fill:   #161616; }
.stroke_AtLoc  { stroke: #161616; }

.fill_Contextgene   { fill: #303030; }
.stroke_Contextgene { stroke: #303030; }

.fill_Sidechain {
  fill: #303030;
}
.stroke_Sidechain {
  stroke: #303030;
}

.fill_Equiv {
  fill: black; /* TODO */
}
.stroke_Equiv {
  stroke: black; /* TODO */
}

.drag_stroke {
  stroke: black;
}
.drag_fill {
  fill: black;
}


#span_form, #arc_form, #auth_form, #file_browser, #import_form {
  position: fixed;
  background-color: #dddddd;
  border: 2px outset #dddddd;
  left: 50px;
  top: 50px;
  height: auto;
  padding: 5px 10px;
  z-index: 10;
  display: none;
  min-width: 400px;
}
#span_form_buttons, #arc_form_buttons, #auth_form_buttons, #import_form_buttons {
  text-align: right;
}
#span_free_div, #arc_free_div {
  float: left;
}
fieldset {
  border: 1px solid #999999;
}
.accesskey {
  text-decoration: underline;
}


.shadow {
  -moz-box-shadow: 5px 5px 5px #444444;
  -webkit-box-shadow: 5px 5px 5px #444444;
  box-shadow: 5px 5px 5px #444444;
}

#span_selected, #arc_origin, #arc_target {
  font-weight: bold;
}

#messages {
  position: fixed;
  bottom: 0;
  left: 0;
  right: 0;
}
#messages > div {
  padding: 10px;
  border: 1px outset #000000;
}

#messages > div.error {
  background-color: #939393;
  color: #000000;
}
#messages > div.warning {
  background-color: #9c9c9c;
  color: #000000;
}
#messages > div.info {
  background-color: #c0c0c0;
  color: #000000;
}
#messages > div.debug {
  background-color: #f3f3f3;
  color: #000000;
}

#messages > div > input {
  float: right;
  display: block;
}

#infopopup {
  position: fixed;
  top: 0;
  left: 0;
  opacity: 0.9;
  padding: 10px;
  display: none;
  border: 1px outset #000000;
  background-color: #eeeeee;
  color: #000000;
  z-index: 20;
  -moz-box-shadow: 5px 5px 5px #aaaaaa;
  -webkit-box-shadow: 5px 5px 5px #aaaaaa;
  box-shadow: 5px 5px 5px #aaaaaa;
}

.info_id {
  font-weight: bold;
}
.info_type {
  font-weight: bold;
}
.info_arc {
  font-weight: bold;
}

#span_form .collapser {
    float: left;
    height: 16px;
    width: 16px;
    margin-top: 3px;
    cursor: hand;
    background: url('expand_icon.gif') no-repeat;
}
#span_form .collapser.open {
    background: url('collapse_icon.gif') no-repeat;
}
#span_form .collapsible.open {
    display: block;
}
#span_form .collapsible {
    display: none;
}
#span_form .item_content {
    margin-left: 16px;
}
#span_form .collapsible {
    margin-left: 20px;
}
.type_scroller {
    background: #cccccc;
    border: 1px inset #cccccc;
    overflow-y: scroll;
    min-height: 50px;
}
#span_highlight_link, #arc_highlight_link {
  float: right;
}
#document_ctime, #document_mtime {
  margin-left: 10px;
  padding: 0 2px;
  background-color: #dddddd;
  border: 1px solid #999999;
  display: none;
}
#blind {
  z-index: 5;
  opacity: 0.5;
  background-color: #000000;
  position: fixed;
  left: 0;
  right: 0;
  top: 0;
  bottom: 0;
}

#logo {
  float:right;
  margin-left: 20px;
}

#spinner {
  display: none;
  position: fixed;
  right:10px;
  top: 55px;
}

#document_select {
  height: 200px;
  display: inline-block;
  border: 2px inset;
  background-color: #ffffff;
  border-collapse: collapse;
  overflow: auto;
  width: 100%;
}
#document_select thead tr * {
  padding: 2px 5px;
}
#document_select tbody tr * {
  padding: 0 5px;
}
#document_select thead {
  background-color: #666666;
  color: #ffffff;
}
#document_select tr {
  cursor: pointer;
}
#document_select tr * {
  white-space: nowrap;
}
#document_select tbody tr:hover {
  background-color: #c2c2c2;
}
#document_select tr.selected {
  background-color: #1c1c1c;
  color: #ffffff;
}
#filedir_inputs_table {
  width: 100%;
}
#filedir_inputs_table input {
  width: 100%;
}
#filedir_inputs_table th {
  width: 50px;
}
#file_browser th {
  font-weight: normal;
  text-align: left;
}
#file_buttons {
  text-align: right;
}
#import_text {
  border: 2px inset #dddddd;
  font-family: inherit;
  height: 150px;
  width: 400px;
}
#import_title {
  width: 400px;
}
#export_page div {
  margin: 5px 5px 5px 5px;
  font-size: 14px;
}
#export_page table {
  border-collapse: collapse;
  border: 1px solid #cccccc;
}
#export_page td, #export_page th {
  padding: 2px 5px;
  text-align: left;
}
#export_page tr.background0 {
  background-color: #eeeeee;
}
#export_page tr.background1 {
  background-color: #dddddd;
}
.ui-icon-gripsmall-diagonal-se {
  margin: 0 -3px -3px 0;
}

.file {
  color: #383838;
}
.dir {
  color: #515151;
}
.rightalign {
  text-align: right;
}