Permalink
Find file Copy path
Fetching contributors…
Cannot retrieve contributors at this time
35 lines (29 sloc) 610 Bytes
#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: Workflow
# Inspired by
# https://github.com/InSilicoDB/pipeline-kallisto/blob/develop/main.nf
hints:
DockerRequirement:
dockerPull: insilicodb/kallisto
inputs:
transcripciones: File[]
lecturas: File[]
steps:
indexing:
run: ../tools/kallisto-index.cwl
in:
fasta-files: transcripciones
out:
- index
quantifying:
run: ../tools/kallisto-quant.cwl
in:
index: indexing/index
fastqs: lecturas
out:
- quantification
outputs:
resultados:
type: File
outputSource: quantifying/quantification