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ArrayIndexOutOfBoundsException upgrading to 0.10.0 version #56

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pditommaso opened this issue Feb 12, 2015 · 1 comment
Closed

ArrayIndexOutOfBoundsException upgrading to 0.10.0 version #56

pditommaso opened this issue Feb 12, 2015 · 1 comment

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@pditommaso
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Upgrading from 0.9.0 to 0.10.0 I'm getting the following exception in some environments, though I'm unable to replicate the exact problem.

CAPSULE: Dependency manager repositories: [central (https://repo1.maven.org/maven2/, default, releases)]
CAPSULE: Launching app nextflow-one_0.12.2
CAPSULE: Locking /users/rg/sdjebali/.nextflow/capsule/apps/nextflow-one_0.12.2/.lock
CAPSULE: Extracting /nfs/users/rg/sdjebali/.nextflow/framework/0.12.2/nextflow-0.12.2-one.jar to app cache directory /users/rg/sdjebali/.nextflow/capsule/apps/nextflow-one_0.12.2
CAPSULE: Using JVM: /usr/java/jdk1.7.0_60/jre
CAPSULE: Unocking /users/rg/sdjebali/.nextflow/capsule/apps/nextflow-one_0.12.2/.lock
CAPSULE EXCEPTION: 0 while processing attribute Library-Path-A: null
java.lang.ArrayIndexOutOfBoundsException: 0
    at sun.nio.fs.UnixPath.normalize(UnixPath.java:508)
    at Capsule.toAbsolutePath(Capsule.java:2669)
    at Capsule.processOutgoingPath0(Capsule.java:2609)
    at Capsule.processOutgoingPath(Capsule.java:2603)
    at Capsule.processOutgoingPath(Capsule.java:2617)
    at Capsule.compileClassPath(Capsule.java:1653)
    at Capsule.buildSystemProperties0(Capsule.java:1827)
    at Capsule.buildSystemProperties(Capsule.java:1815)
    at Capsule.buildSystemProperties(Capsule.java:1800)
    at Capsule.buildJavaProcess(Capsule.java:1582)
    at Capsule.buildProcess0(Capsule.java:1153)
    at Capsule.buildProcess(Capsule.java:1144)
    at Capsule.prelaunch0(Capsule.java:1122)
    at Capsule.prelaunch(Capsule.java:1118)
    at CapsuleLoader.prelaunch(CapsuleLoader.java:46)
    at Capsule.prepareForLaunch(Capsule.java:1033)
    at Capsule.launch(Capsule.java:974)
    at Capsule.main0(Capsule.java:296)
    at Capsule.main(Capsule.java:275)
@pron
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pron commented Feb 12, 2015

Closed by this commit: work around JDK-8037945

@pron pron closed this as completed Feb 12, 2015
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