Vita brevis, ars longa
CTO & Co-founder of Seqera Labs.
Distributed, parallel and reactive programming. Creator of http://nextflow.io.
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Seqera Labs
- Barcelona, Spain
- https://www.seqera.io
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awesome-pipeline Public
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
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3,479 contributions in the last year
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Activity overview
Contributed to
nextflow-io/nextflow,
nextflow-io/website,
nextflow-io/plugins
and 47 other
repositories
Contribution activity
May 2023
Created a pull request in nextflow-io/nextflow that received 21 comments
Implement job array using TaskRun as carrier
This PR is a refactoring of #3892 that removes a lot of code duplication introduced by the submitter pattern. The main idea is to avoid specialised…
+486
−30
•
21
comments
Opened 2 other pull requests in 1 repository
nextflow-io/nextflow
2
merged
Reviewed 21 pull requests in 4 repositories
nextflow-io/nextflow
16 pull requests
- Add httpConnectTimeout and httpReadTimeout to google config
- Add disk resource with type option for google batch
- Improve documentation on Nextflow scripts
- Add CPU model name to trace files and traceRecord
- Fix invalid machine type setting when no valid machine type is found
- Use full map of valid options for JsonSplitter creation
- Patch Google batch instance types
- Clarify tip about groupTuple size and groupKey
- Enable static compilation for task processing code
- Azure jobs correctly deleted after completion
- Fixing bug 2428 for errorStrategy ignore
- fix: Azure retry policy corrected
- Support array jobs
- [Beta Test] Wave Containers: add support for the Spack package manager
- Add an option types to splitCsv() to cast the variable types
- Implement job array using TaskRun as carrier
nextflow-io/plugins
2 pull requests
nextflow-io/website
2 pull requests
seqeralabs/nf-tower-docs
1 pull request
Created an issue in nextflow-io/nextflow that received 1 comment
Unexpected timeout error while resolving Wave config
Bug report
The following error can be reported while resolving the Wave configuration
java.lang.reflect.UndeclaredThrowableException: null at jdk.p…
1
comment
Answered 1 discussion in 1 repository
nextflow-io/nextflow
nextflow-io/nextflow
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Handle bad submissions in a plugin
This contribution was made on May 9
174
contributions
in private repositories
May 1 – May 30