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accession_rules.json
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accession_rules.json
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[
[
[
"BA",
"DF",
"DG",
"LD"
],
"DDBJ",
"unknown",
"CON division"
],
[
[
"AN"
],
"EMBL",
"unknown",
"CON division"
],
[
[
"CH",
"CM",
"DS",
"EM",
"EN",
"EP",
"EQ",
"FA",
"GG",
"GL",
"JH",
"KB",
"KD",
"KE",
"KI",
"KK",
"KL",
"KN",
"KQ",
"KV",
"KZ",
"ML"
],
"NCBI",
"unknown",
"CON division"
],
[
[
"C",
"AT",
"AU",
"AV",
"BB",
"BJ",
"BP",
"BW",
"BY",
"CI",
"CJ",
"DA",
"DB",
"DC",
"DK",
"FS",
"FY",
"HX",
"HY",
"LU"
],
"DDBJ",
"unknown",
"EST"
],
[
[
"F"
],
"EMBL",
"unknown",
"EST"
],
[
[
"H",
"N",
"T",
"R",
"W",
"AA",
"AI",
"AW",
"BE",
"BF",
"BG",
"BI",
"BM",
"BQ",
"BU",
"CA",
"CB",
"CD",
"CF",
"CK",
"CN",
"CO",
"CV",
"CX",
"DN",
"DR",
"DT",
"DV",
"DW",
"DY",
"EB",
"EC",
"EE",
"EG",
"EH",
"EL",
"ES",
"EV",
"EW",
"EX",
"EY",
"FC",
"FD",
"FE",
"FF",
"FG",
"FK",
"FL",
"GD",
"GE",
"GH",
"GO",
"GR",
"GT",
"GW",
"HO",
"HS",
"JG",
"JK",
"JZ"
],
"GenBank",
"unknown",
"EST"
],
[
[
"D",
"AB",
"LC"
],
"DDBJ",
"unknown",
"Direct submissions"
],
[
[
"V",
"X",
"Y",
"Z",
"AJ",
"AM",
"FM",
"FN",
"HE",
"HF",
"HG",
"FO",
"LK",
"LL",
"LM",
"LN",
"LO",
"LR",
"LS",
"LT",
"OA",
"OB",
"OC",
"OD",
"OE"
],
"EMBL",
"unknown",
"Direct submissions"
],
[
[
"U",
"AF",
"AY",
"DQ",
"EF",
"EU",
"FJ",
"GQ",
"GU",
"HM",
"HQ",
"JF",
"JN",
"JQ",
"JX",
"KC",
"KF",
"KJ",
"KM",
"KP",
"KR",
"KT",
"KU",
"KX",
"KY",
"MF",
"MG",
"MH",
"MK",
"MN"
],
"GenBank",
"unknown",
"Direct submissions"
],
[
[
"AP"
],
"DDBJ",
"unknown",
"Genome project data"
],
[
[
"BS"
],
"DDBJ",
"unknown",
"Chimpanzee genome data"
],
[
[
"AL",
"BX",
"CR",
"CT",
"CU",
"FP",
"FQ",
"FR"
],
"EMBL",
"unknown",
"Genome project data"
],
[
[
"AE",
"CP",
"CY"
],
"GenBank",
"unknown",
"Genome project data"
],
[
[
"AG",
"DE",
"DH",
"FT",
"GA",
"LB"
],
"DDBJ",
"unknown",
"GSS"
],
[
[
"B",
"AQ",
"AZ",
"BH",
"BZ",
"CC",
"CE",
"CG",
"CL",
"CW",
"CZ",
"DU",
"DX",
"ED",
"EI",
"EJ",
"EK",
"ER",
"ET",
"FH",
"FI",
"GS",
"HN",
"HR",
"JJ",
"JM",
"JS",
"JY",
"KG",
"KO",
"KS",
"MJ"
],
"GenBank",
"unknown",
"GSS"
],
[
[
"AK"
],
"DDBJ",
"unknown",
"cDNA projects"
],
[
[
"AC",
"DP"
],
"GenBank",
"unknown",
"HTGS"
],
[
[
"E",
"BD",
"DD",
"DI",
"DJ",
"DL",
"DM",
"FU",
"FV",
"FW",
"FZ",
"GB",
"HV",
"HW",
"HZ",
"LF",
"LG",
"LV",
"LX",
"LY",
"LZ",
"MA",
"MB",
"MC"
],
"DDBJ",
"unknown",
"Patents"
],
[
[
"A",
"AX",
"CQ",
"CS",
"FB",
"GM",
"GN",
"HA",
"HB",
"HC",
"HD",
"HH",
"HI",
"JA",
"JB",
"JC",
"JD",
"JE",
"LP",
"LQ",
"MP",
"MQ",
"MR",
"MS"
],
"EMBL",
"unknown",
"Patents (nucleotide only)"
],
[
[
"I",
"AR",
"DZ",
"EA",
"GC",
"GP",
"GV",
"GX",
"GY",
"GZ",
"HJ",
"HK",
"HL",
"KH",
"MI",
"MM",
"MO"
],
"GenBank",
"unknown",
"Patents (nucleotide)"
],
[
[
"G",
"BV",
"GF"
],
"GenBank",
"unknown",
"STS"
],
[
[
"BR"
],
"DDBJ",
"unknown",
"TPA"
],
[
[
"BN"
],
"EMBL",
"unknown",
"TPA"
],
[
[
"BK"
],
"GenBank",
"unknown",
"TPA"
],
[
[
"HT",
"HU"
],
"DDBJ",
"unknown",
"TPA CON division"
],
[
[
"BL",
"GJ",
"GK"
],
"GenBank",
"unknown",
"TPA CON division"
],
[
[
"EZ",
"HP",
"JI",
"JL",
"JO",
"JP",
"JR",
"JT",
"JU",
"JV",
"JW",
"KA"
],
"GenBank",
"unknown",
"TSA"
],
[
[
"FX",
"LA",
"LE",
"LH",
"LI",
"LJ"
],
"DDBJ",
"unknown",
"TSA"
],
[
[
"S"
],
"GenBank",
"unknown",
"From journal scanning"
],
[
[
"AD"
],
"GenBank",
"unknown",
"From GSDB"
],
[
[
"AH"
],
"GenBank",
"unknown",
"Segmented set header"
],
[
[
"AS"
],
"GenBank",
"unknown",
"Other - not currently being used"
],
[
[
"BC"
],
"GenBank",
"unknown",
"MGC project"
],
[
[
"BT"
],
"GenBank",
"unknown",
"FLI-cDNA projects"
],
[
[
"J",
"K",
"L",
"M"
],
"GenBank",
"unknown",
"from GSDB direct submissions"
],
[
[
"N"
],
"GenBank and DDBJ",
"unknown",
"N0-N2 were used intially by both groups but have been removed from circulation, N2-N9 are ESTs "
],
[
[
"AAAA-AZZZ",
"JAAA-JZZZ",
"LAAA-LZZZ",
"MAAA-MZZZ",
"NAAA-NZZZ",
"PAAA-PZZZ",
"QAAA-QZZZ",
"RAAA-RZZZ",
"SAAA-SZZZ",
"VAAA-VZZZ"
],
"GenBank",
"unknown",
"WGS"
],
[
[
"AAAAAA-AZZZZZ"
],
"GenBank",
"unknown",
"WGS"
],
[
[
"BAAA-BZZZ"
],
"DDBJ",
"unknown",
"WGS"
],
[
[
"BAAAAA-BZZZZZ"
],
"DDBJ",
"unknown",
"WGS"
],
[
[
"CAAA-CZZZ",
"FAAA-FZZZ",
"OAAA-OZZZ",
"UAAA-UZZZ"
],
"EMBL",
"unknown",
"WGS"
],
[
[
"CAAAAA-CZZZZZ"
],
"EMBL",
"unknown",
"WGS"
],
[
[
"DAAA-DZZZ"
],
"GenBank",
"unknown",
"WGS TPA"
],
[
[
"DAAAAA-DZZZZZ"
],
"GenBank",
"unknown",
"WGS TPA"
],
[
[
"EAAA-EZZZ"
],
"DDBJ",
"unknown",
"WGS TPA"
],
[
[
"GAAA-GZZZ"
],
"GenBank",
"unknown",
"TSA"
],
[
[
"HAAA-HZZZ"
],
"EMBL",
"unknown",
"TSA"
],
[
[
"IAAA-IZZZ"
],
"DDBJ",
"unknown",
"TSA"
],
[
[
"TAAA-TZZZ"
],
"DDBJ",
"unknown",
"Targeted Gene Projects"
],
[
[
"KAAA-KZZZ"
],
"GenBank",
"unknown",
"Targeted Gene Projects"
],
[
[
"AAAAA-AZZZZ"
],
"DDBJ",
"unknown",
"MGA"
],
[
[
"BAA-BZZ"
],
"DDBJ",
"unknown",
"Protein ID"
],
[
[
"CAA-CZZ",
"SAA-SZZ",
"VAA-VZZ"
],
"EMBL",
"unknown",
"Protein ID"
],
[
[
"AAA-AZZ",
"QAA-QZZ"
],
"GenBank",
"unknown",
"Protein ID"
],
[
[
"AAE"
],
"GenBank",
"unknown",
"Protein ID for Patents (note that there are also some patent proteins with AAA and AAC"
],
[
[
"FAA_FZZ"
],
"DDBJ",
"unknown",
"TPA Protein ID"
],
[
[
"DAA-DZZ"
],
"GenBank",
"unknown",
"TPA or TPA WGS Protein ID"
],
[
[
"GAA-GZZ"
],
"DDBJ",
"unknown",
"WGS Protein ID"
],
[
[
"EAA-EZZ",
"KAA-KZZ",
"OAA-OZZ",
"PAA-PZZ",
"RAA-RZZ",
"TAA-TZZ"
],
"GenBank",
"unknown",
"WGS Protein ID"
],
[
[
"HAA-HZZ"
],
"GenBank",
"unknown",
"TPA WGS/TSA Protein ID"
],
[
[
"IAA-IZZ"
],
"DDBJ",
"unknown",
"TPA WGS Protein ID"
],
[
[
"LAA-LZZ"
],
"DDBJ",
"unknown",
"TSA or Targeted Gene Project Protein ID"
],
[
[
"JAA-JZZ"
],
"GenBank",
"unknown",
"TSA Protein ID"
],
[
[
"MAA-MZZ",
"NAA-NZZ"
],
"GenBank",
"unknown",
"WGS/TSA Protein ID"
],
[
[
"AC_"
],
"NCBI",
"Genomic",
"Complete genomic molecule, usually alternate assembly"
],
[
[
"NC_"
],
"NCBI",
"Genomic",
"Complete genomic molecule, usually reference assembly"
],
[
[
"NG_"
],
"NCBI",
"Genomic",
"Incomplete genomic region"
],
[
[
"NT_"
],
"NCBI",
"Genomic",
"Contig or scaffold, clone-based or WGSa"
],
[
[
"NW_"
],
"NCBI",
"Genomic",
"Contig or scaffold, primarily WGSa"
],
[
[
"NZ_b"
],
"NCBI",
"Genomic",
"Complete genomes and unfinished WGS data"
],
[
[
"NM_"
],
"NCBI",
"mRNA",
"Protein-coding transcripts (usually curated)"
],
[
[
"NR_"
],
"NCBI",
"RNA",
"Non-protein-coding transcripts"
],
[
[
"XM_c"
],
"NCBI",
"mRNA",
"Predicted model protein-coding transcript"
],
[
[
"XR_c"
],
"NCBI",
"RNA",
"Predicted model non-protein-coding transcript"
],
[
[
"AP_"
],
"NCBI",
"Protein",
"Annotated on AC_ alternate assembly"
],
[
[
"NP_"
],
"NCBI",
"Protein",
"Associated with an NM_ or NC_ accession"
],
[
[
"YP_c"
],
"NCBI",
"Protein",
"Annotated on genomic molecules without an instantiatedtranscript record"
],
[
[
"XP_c"
],
"NCBI",
"Protein",
"Predicted model, associated with an XM_ accession"
],
[
[
"WP_"
],
"NCBI",
"Protein",
"Non-redundant across multiple strains and species"
],
[
[
"SRA"
],
"NCBI",
"SRA",
"SRA submission accession: The submission accession represents a virtual container that holds the objects represented by the other five accessions and is used to track the submission in the archive."
],
[
[
"SRP"
],
"NCBI",
"SRA",
"SRA study accession: A Study is an object that contains the project metadata describing a sequencing study or project. Imported from BioProject."
],
[
[
"SRX"
],
"NCBI",
"SRA",
"SRA experiment accession: An Experiment is an object that contains the metadata describing the library, platform selection, and processing parameters involved in a particular sequencing experiment."
],
[
[
"SRR"
],
"NCBI",
"SRA",
"SRA run accession: A Run is an object that contains actual sequencing data for a particular sequencing experiment. Experiments may contain many Runs depending on the number of sequencing instrument runs that were needed."
],
[
[
"SRS"
],
"NCBI",
"SRA",
"SRA sample accession: A Sample is an object that contains the metadata describing the physical sample upon which a sequencing experiment was performed. Imported from BioSample."
],
[
[
"SRZ"
],
"NCBI",
"SRA",
"SRA analysis accession: An analysis is an object that contains a sequence data analysis BAM file and the metadata describing the sequence analysis."
],
[
[
"ERA"
],
"EMBL",
"SRA",
"ERA submission accession: The submission accession represents a virtual container that holds the objects represented by the other five accessions and is used to track the submission in the archive."
],
[