The contents of this file will change. This file contains some generic instructions of how to build the NEMS application. For SCHISM only please try:

./build.sh --component "SCHISM" --compiler intel --clean -2

OR,

./build.sh --component "SCHISM" --plat orion --compiler intel --clean -2

OR,

./build.sh --help

to see all available options.

Panagiotis Velissariou - 05/29/2021

For MacOS running MacPorts, issue

./build.sh -compiler gnu -component SCHISM -plat macports

---

---

ADC-WW3-NWM-NEMS

ESMF application for building a NUOPC / NEMS application coupling ADCIRC, ATMESH, WW3 / WW3DATA, and NWM.

ADC-WW3-NWM-NEMS is an ESMF application developed as part of the Coastal Act coupling project to determine wind versus water percentage loss caused by a Named Storm Event.

git clone --recursive https://github.com/noaa-ocs-modeling/ADC-WW3-NWM-NEMS
cd ADC-WW3-NWM-NEMS

Compilation

./build.sh --component "ADCIRC ATMESH WW3DATA" --plat hera --compiler intel --clean -2 

• --component can be any combination of
  • ADCIRC
  • ATMESH
  • WW3 / WW3DATA
  • NWM
• --plat can be any combination of
  • hera
  • stampede
  • wcoss
  • orion
  • jet
  • gaea
  • cheyenne
  • linux
  • macosx
• --compiler can be one of
  • intel
  • gnu
  • pgi
• --clean is optional, and can be one of
  • (make clean and exit)
  • 1 (make clean and exit)
  • 2 (make clobber and exit)
  • -1 (make clean and build)
  • -2 (make clobber and build)

adding a new platform / compiler to compilation script

Environment files are stored in modulefiles/ with the filename envmodules_<COMPILER>.<PLATFORM>

To compile in your own system you should create a similar file, then run build.sh to compile.

Requirements

installing ParMETIS for WW3

Using unstructured WW3 requires an installation of ParMETIS for domain decomposition.

1. download the code here
2. build ParMETIS

   module purge
   module load intel impi
   setenv CFLAGS -fPIC
   make config cc=mpiicc cxx=mpiicc prefix=/path/to/your/parmetis/ | & tee config.out-rr
   make install | & tee make-install.out-rr

   This adds libparmetis.a under /path/to/your/parmetis/lib/libparmetis.a.
3. set the path to ParMETIS

   setenv METIS_PATH /path/to/your/parmetis

Collaboration

To collaborate and contribute to this repository follow below instructions:

1. go to https://github.com/noaa-ocs-modeling/ADC-WW3-NWM-NEMS
2. create a fork (click Fork on the upper right corner), and fork to your account.
3. clone your forked repository

   git clone --recursive https://github.com/<ACCOUNT>/ADC-WW3-NWM-NEMS

4. edit the files locally

   git status

5. commit changes

   git commit -a -m "describe what you changed"

6. push your changes to GitHub

   git push

7. enter your GitHub username/password if asked
8. create a pull request with descriptions of changes at

   https://github.com/noaa-ocs-modeling/ADC-WW3-NWM-NEMS/compare/<BRANCH>...<ACCOUNT>:<BRANCH>
   

Citations

Moghimi, S., Van der Westhuysen, A., Abdolali, A., Myers, E., Vinogradov, S., 
   Ma, Z., Liu, F., Mehra, A., & Kurkowski, N. (2020). Development of an ESMF 
   Based Flexible Coupling Application of ADCIRC and WAVEWATCH III for High 
   Fidelity Coastal Inundation Studies. Journal of Marine Science and 
   Engineering, 8(5), 308. https://doi.org/10.3390/jmse8050308

Moghimi, S., Vinogradov, S., Myers, E. P., Funakoshi, Y., Van der Westhuysen, 
   A. J., Abdolali, A., Ma, Z., & Liu, F. (2019). Development of a Flexible 
   Coupling Interface for ADCIRC model for Coastal Inundation Studies. NOAA 
   Technical Memorandum, NOS CS(41). 
   https://repository.library.noaa.gov/view/noaa/20609/

Moghimi, S., Westhuysen, A., Abdolali, A., Myers, E., Vinogradov, S., Ma, Z., 
   Liu, F., Mehra, A., & Kurkowski, N. (2020). Development of a Flexible 
   Coupling Framework for Coastal Inundation Studies. 
   https://arxiv.org/abs/2003.12652