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Main module blending #233
Main module blending #233
Commits on Apr 3, 2019
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Commits on Aug 4, 2021
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pysteps.io with xarray (pySTEPS#219)
* Add xarray dependency * MCH importer returns an xarray Dataset * Remove plot lines * Remove import * Adapt readers to xarray format * Rewrite as more general decorator * Add missing metadata * Adapt io tests * Mrms bounding box (pySTEPS#222) * Fix bounding box coordinates * Add missing metadata * Import xarray DataArray Ignore quality field * Black * Do not hardcode metadata * Address review comments by ruben * Add a legacy option to the io functions A "legacy" options is added to revert back the importers and readers behavior to version 1. This is a temporary solution to allow the examples, and other functions, to run as usual (v1.*). Hopefully, this is will allow a easier transition into version 2 during the development process and will allow testing functions that were not updated to v2. * Fix compatibility problems with tests Many of the tests were updated to use the legacy data structures (v1). The tests that still contains issues, were tagged with a TODO message and they are skipped. This will allow incremental changes to be tested in the new v2. IMPORTANT: once the v2 branch is stable, we may remove the legacy compatibility from the code base and the tests. * Update dependencies * Ignore plugins test Co-authored-by: Andres Perez Hortal <16256571+aperezhortal@users.noreply.github.com>
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Commits on Aug 8, 2021
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Commits on Aug 10, 2021
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Commits on Aug 11, 2021
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First attempt to make correlations and thus weights lead time depende…
…nt (in progress..)
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Commits on Aug 12, 2021
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Change back to original BPS2006 blending formulation and add regressi…
…on of skill values to climatological values for weights determination
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Commits on Aug 13, 2021
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Commits on Aug 16, 2021
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Commits on Aug 17, 2021
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Bom import xarray (pySTEPS#228)
* Add import_bom_rf3 using xarray * Add tests to xarray version * Fix mrms importer tests * Pass **kwargs to internal functions * Add nwp_importers to read bom nwp sample data * Add bom nwp data to source file * Add tests for bom_nwp reader * Fix pystepsrc Co-authored-by: Andres Perez Hortal <16256571+aperezhortal@users.noreply.github.com>
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Commits on Aug 18, 2021
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Functions to store and compute climatological weights (pySTEPS#231)
* Implement the functions get_default_weights, save_weights, calc_clim_weights. These functions are used to evolve the weights in the scale- and skill-dependent blending with NWP in the STEPS blending algorithm. The current weights, based on the correlations per cascade level, are regressed towards these climatological weights in the course of the forecast. These functions save the current and compute the climatological weights (a running mean of the weights of the past n days, where typically n=30). First daily averages are stored and these are then averaged over the running window of n days. * Add tests for pysteps climatological weight io and calculations. * Add path_workdir to outputs section in pystepsrc file and use it as a default path to store/retrieve blending weights. * Minor changes to docstrings, changes to skill scores and testing scripts * Completed documentation for blending clim module, cleanup. Co-authored-by: RubenImhoff <r.o.imhoff@live.nl>
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Commits on Aug 24, 2021
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Commits on Aug 25, 2021
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Add utilities to decompose, store and load NWP cascades for use in bl…
…ending (pySTEPS#232) * First version of NWP decomposition * Added saving to netCDF * Completed functions for saving and loading decomposed NWP data * Added example files for the decomposed NWP functions * Added compatibility with numpy datetime * Use default output path_workdir for tmp files in blending/utils.py. * Update documentation of NWP decomposition functions in utils.py Co-authored-by: Wout Dewettinck <wout.dewettinck@ugent.be> Co-authored-by: wdewettin <87696913+wdewettin@users.noreply.github.com>
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Add importer for RMI NWP data (pySTEPS#234)
Add importer for netcdf NWP data from RMI using xarrays. * Add test for RMI NWP data importer. * Add entry for RMI NWP data in pystepsrc. * Run black on everything: fix formatting.
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Changes to v_models to make use of multiple timesteps. Changes in the…
… velocity field over time in the NWP forecast will be taken into account now.
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Add forgotten @postprocess_import() Don't call dropna on NWP data.
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Commits on Aug 26, 2021
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Commits on Aug 27, 2021
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Commits on Sep 2, 2021
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Prob matching and masking changes; part 3. Ready for testing with rea…
…l data from here on
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Commits on Sep 15, 2021
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Commits on Sep 28, 2021
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Merge pull request #11 from pySTEPS/steps_blending
Merge steps_blending into local branch
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Commits on Oct 1, 2021
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Commits on Oct 5, 2021
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Reprojection functionality (pySTEPS#236)
* Added Lesley's reprojection module to this branch * Added compatibility for three-dimensional xarrays * Add commentary to reprojection util * Changes to make reprojection of KNMI data possible * Changes after Daniele's review * Add dependencies * Changes to importers, see issue pySTEPS#215 * Add tests * Fix some issues * documentation * Fixes for tests * Set requirements again * Some fixes * Changes to nwp_importers after Carlos' response * Remove wrong example script * Remove rasterio dependencies from lists * First try to prevent testing error * Changes Daniele and fix knmi nwp importer * Add rasterio to tox.ini * Aesthetics * rasterio import test * Add rasterio to the test dependencies * Reset try-except functionality for rasterio import * Fix for failing test on windows python 3.6 * add importerskip rasterio Co-authored-by: Wout Dewettinck <wout.dewettinck@ugent.be>
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Commits on Oct 6, 2021
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Merge pull request #12 from pySTEPS/pysteps-v2
Merge Pysteps v2 in branch
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Commits on Oct 11, 2021
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Merge latest version pysteps-v2 into steps_blending branch (pySTEPS#237)
* Update docstrings * More cleanup * Cleanup imports * Cleanup imports * More cleanup * Update docstrings * Update references Mention the work of Ravuri et al (2021, Nature) as an example of work using cGANs to generate ensembles * Clean up page * Reprojection functionality (pySTEPS#236) * Added Lesley's reprojection module to this branch * Added compatibility for three-dimensional xarrays * Add commentary to reprojection util * Changes to make reprojection of KNMI data possible * Changes after Daniele's review * Add dependencies * Changes to importers, see issue pySTEPS#215 * Add tests * Fix some issues * documentation * Fixes for tests * Set requirements again * Some fixes * Changes to nwp_importers after Carlos' response * Remove wrong example script * Remove rasterio dependencies from lists * First try to prevent testing error * Changes Daniele and fix knmi nwp importer * Add rasterio to tox.ini * Aesthetics * rasterio import test * Add rasterio to the test dependencies * Reset try-except functionality for rasterio import * Fix for failing test on windows python 3.6 * add importerskip rasterio Co-authored-by: Wout Dewettinck <wout.dewettinck@ugent.be> * Revert "Merge branch 'steps_blending' into pysteps-v2" (pySTEPS#239) This reverts commit 2c639f8, reversing changes made to bccb8fc. Co-authored-by: ned <daniele.nerini@meteoswiss.ch> Co-authored-by: dnerini <daniele.nerini@gmail.com> Co-authored-by: Wout Dewettinck <wout.dewettinck@ugent.be>
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Commits on Oct 12, 2021
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Commits on Oct 19, 2021
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Commits on Oct 20, 2021
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Commits on Oct 25, 2021
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Update contributing guidelines (pySTEPS#241)
- Improve grammar. - Make the guide more concise. Remove unused/unnecessary rules. - Indicate more clearly which parts of the guidelines are inspired by other projects (before they were only mentioned at the end). - Change "Travis-CI" references by "GitHub Actions".
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Commits on Nov 2, 2021
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Commits on Nov 3, 2021
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* Implemented linear blending function * Added example file and test * Added compatibility for NWP ensembles The PR is ready to go. Making the code xarray ready will be done in a separate PR. Co-authored-by: RubenImhoff <r.o.imhoff@live.nl>
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Commits on Nov 17, 2021
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Commits on Dec 8, 2021
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Commits on Dec 10, 2021
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Commits on Dec 20, 2021
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minor changes to blending climatology, blending weights and remove pa…
…th_workdir from pystepsrc
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Commits on Dec 22, 2021
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Commits on Jan 3, 2022
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Commits on Jan 10, 2022
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Merge pull request #13 from RubenImhoff/refactor-blending
Refactoring of main steps blending code
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Commits on Jan 13, 2022
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Access climatological skill file for multiple NWP model and date stri…
…ng changes to prevent errors in blending.utils
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