dsl.rst

Internal Domain Specific Language

pybel.dsl

Primitives

pybel.dsl.Entity

pybel.dsl.BaseEntity

pybel.dsl.BaseAbundance

pybel.dsl.ListAbundance

Named Entities

pybel.dsl.Abundance

pybel.dsl.BiologicalProcess

pybel.dsl.Pathology

pybel.dsl.Population

Central Dogma

pybel.dsl.CentralDogma

pybel.dsl.Gene

pybel.dsl.Transcribable

pybel.dsl.Rna

pybel.dsl.MicroRna

pybel.dsl.Protein

Variants

pybel.dsl.Variant

pybel.dsl.ProteinModification

pybel.dsl.GeneModification

pybel.dsl.Hgvs

pybel.dsl.HgvsReference

pybel.dsl.HgvsUnspecified

pybel.dsl.ProteinSubstitution

pybel.dsl.Fragment

Fusions

pybel.dsl.FusionBase

pybel.dsl.GeneFusion

pybel.dsl.RnaFusion

pybel.dsl.ProteinFusion

Fusion Ranges

pybel.dsl.FusionRangeBase

pybel.dsl.EnumeratedFusionRange

pybel.dsl.MissingFusionRange

List Abundances

pybel.dsl.ComplexAbundance

pybel.dsl.CompositeAbundance

pybel.dsl.Reaction

Utilities

The following functions are useful to build DSL objects from dictionaries:

pybel.tokens.parse_result_to_dsl